|
| Status |
Public on Mar 01, 2022 |
| Title |
Transcriptome profiling in an Escherichia coli strain collection |
| Organism |
Escherichia coli |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
In order to understand the impact of genetic variants on transcription and ultimately in changes in observed phenotypes we have measured transcript levels in an Escherichia coli strains collection, for which genetic and phenotypic data has also been measured.
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| Overall design |
Each sample has been analysed at least in duplicate. All samples were harvested when cultures reached O.D. of about 0.2 (at 600 nanometers).
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| Contributor(s) |
Galardini M, Zeitek M, Telzerow A, Pavlinic D, Pistolic J, Goldman N, Typas A, Beltrao P |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Feb 04, 2019 |
| Last update date |
Mar 02, 2022 |
| Contact name |
Pedro Beltrao |
| Organization name |
EMBL-EBI
|
| Street address |
Wellcome Genome Campus
|
| City |
Cambridge |
| ZIP/Postal code |
CB10 1SD |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL21222 |
Illumina NextSeq 500 (Escherichia coli) |
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| Samples (252)
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| Relations |
| BioProject |
PRJNA520928 |
| SRA |
SRP183539 |
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