|
| Status |
Public on Mar 19, 2020 |
| Title |
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [RNA-Seq] |
| Organism |
human metagenome |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Antibiotic resistance genes expressed in the upper respiratory tract of patients infected with influenza viruses were associated with the microbial community and microbial activities. Interactions between the host systemic responses to influenza infection and ARG expression highlight the importance of antibiotic resistance in viral-bacterial co-infection.
|
| |
|
| Overall design |
The microbial gene expression were profiled from the 35 respiratory samples taken from influenza infected individuals
|
| |
|
| Contributor(s) |
Zhang L |
| Citation(s) |
32178738 |
| |
| Submission date |
Feb 21, 2019 |
| Last update date |
Jun 18, 2020 |
| Contact name |
Elodie Ghedin |
| Organization name |
NYU
|
| Department |
Biology
|
| Lab |
Ghedin
|
| Street address |
12 Waverly Place
|
| City |
New York |
| State/province |
New York |
| ZIP/Postal code |
10003 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL26213 |
Illumina HiSeq 2500 (human metagenome) |
|
| Samples (35)
|
|
| This SubSeries is part of SuperSeries: |
| GSE126902 |
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection |
|
| Relations |
| BioProject |
PRJNA523622 |
| SRA |
SRP186511 |
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