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Series GSE129322 Query DataSets for GSE129322
Status Public on Apr 05, 2019
Title MUTHEC
Organism Homo sapiens
Experiment type Expression profiling by RT-PCR
Summary We analyzed 801 primary HCC developed in 720 patients. Samples were collected from 1992 to 2016 in three French tertiary liver centers in patients treated by liver resection, liver transplantation (surgical samples) and in patients treated by radiofrequency ablation and with advanced HCC treated by non-curative therapies (tumor biopsies). All samples obtained from surgical samples or tumor biopsy were immediately frozen in liquid nitrogen and stored at -80°C prior extraction. We assessed mRNA expression by quantitative RT-PCR in a subset of 757 liver tumor samples. 517 to 782 HCC, according to the gene considered, were sequenced for 30 driver genes (TERT, TP53, CTNNB1, AXIN1, PIK3CA, ARID1A, ARID2, RPS6KA3, NFE2L2, CDKN2A, IL6ST, BRAF, STAT3, HNF1A, JAK1, KRAS, GNAS, KEAP1, IRF2, HRAS, NRAS, TSC2, APOB, TSC1, ALB, CDKN1A, MAP1B, SETD2, ATM and MLL2).
 
Overall design Quantitative RT-PCR and target sequencing on human hepatocellular carcinoma (HCC)
 
Contributor(s) Charles Nault J, Imbeaud S, Zucman-Rossi J
Citation(s) 31206197
Submission date Apr 04, 2019
Last update date Nov 02, 2020
Contact name Sandrine Imbeaud
E-mail(s) sandrine.imbeaud@inserm.fr
Organization name Centre de Recherche des Cordeliers
Department INSERM UMRS1138-EQUIPE 28, Sorbonne Université-Inserm-Université de Paris
Lab FUNctional GEnomics of Solid Tumors - FunGeST
Street address 15 rue de l'Ecole de Médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platforms (1)
GPL26393 TaqMan Fluidigm 96 dynamic arrays
Samples (687)
GSM3704522 CHC008T
GSM3704523 CHC010T
GSM3704524 CHC012T
Relations
BioProject PRJNA530960

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129322_non-normalized.txt.gz 97.7 Kb (ftp)(http) TXT
Processed data included within Sample table

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