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Series GSE13487 Query DataSets for GSE13487
Status Public on Oct 01, 2009
Title Antitumor efficacy of RAF inhibitor GDC-0879 involving BRAFV600E mutational status and ERK/MAPK pathway suppression
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Unsupervised hierarchical clustering revealed a strong similarity in gene modulation resulting from either compound treatment or BRAF ablation mediated by RNA interference relative to DMSO-treated control samples .

Keywords: Expression Array
 
Overall design We have generated melanoma A375 cells stably expressing a shRNA construct for doxycycline-inducible knockdown of B-Raf (2 mg/ml Dox, 48h). Small molecule treatment was at 1000nM R341787, 24h.
 
Contributor(s) Modrusan Z, Haverty P, Hoeflich K
Citation(s) 19276360
Submission date Nov 05, 2008
Last update date Mar 25, 2019
Contact name Peter Haverty
E-mail(s) phaverty@gene.com
Organization name Genentech, Inc.
Department Bioinformatics
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (30)
GSM339960 A375control_1677_10uM_1
GSM339961 A375control_1677_10uM_2
GSM339962 A375sh2BRaf_1677_1
Relations
BioProject PRJNA110165

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE13487_RAW.tar 151.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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