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Series GSE139205 Query DataSets for GSE139205
Status Public on Oct 19, 2022
Title Host metabolic reprogramming during immune activation promotes intracellular bacterial survival (host and bacteria)
Organisms Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium
Experiment type Expression profiling by high throughput sequencing
Summary Intracellular pathogens, such as Salmonella enterica serovar Typhimurium (S.Tm), are able to sense and respond to a changing host cell environment. Macrophages exposed to microbial products undergo metabolic changes that are increasingly understood to drive a productive inflammatory response. However, the role of macrophage metabolic reprogramming in bacterial adaptation to the intracellular environment has not been explored. Here we show that changes in host metabolic state serve as a signal detected byS.Tm. Using metabolic profiling and dual RNA-seq, we show that succinate accumulates in infected macrophages and is sensed by intracellular S.Tm to promote induction of virulence genes. Succinate uptake by the bacterium drives induction of pmrAB-dependent genes and SPI-2 virulence-associated regulon. S.Tm lacking the DcuB transporter for succinate uptake display impaired intracellular survival. Our work demonstrates that accumulation of metabolic intermediates, necessary for macrophage activation, promote intracellular survival of pathogens, opening a new realm of metabolic host-pathogen crosstalk.
 
Overall design DualSeq data. 18 Mus musculus samples (control, manZ, and WT bacteria, with or without 2-DG at 0.5h, 6h and 24h post-infection) in triplicates. 12 Salmonella enterica serovar Typhimurium samples (manZ and WT bacteria, with or without 2-DG at 0.5h, 6h and 24h posut-infection) in triplicates.
Web link https://pubmed.ncbi.nlm.nih.gov/33479153/
 
Contributor(s) Rosenberg G, Yehezkel D, Nissani N, Hen-Avivi S, Brenner S, Itkin M, Malitsky S, Bossel Ben-Moshe N, Avraham R
Citation(s) 33479153
Submission date Oct 21, 2019
Last update date Jan 19, 2023
Contact name Roi Avraham
E-mail(s) roi.avraham@weizmann.ac.il
Organization name Weizmann Institute of Science
Street address Herzl St 234
City Rehovot
ZIP/Postal code 7610001
Country Israel
 
Platforms (2)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL24107 Illumina NextSeq 500 (Mus musculus; Salmonella enterica subsp. enterica serovar Typhimurium)
Samples (54)
GSM4133976 0.5h_no_bc_no_2DG_rep1
GSM4133977 0.5h_no_bc_no_2DG_rep2
GSM4133978 0.5h_no_bc_no_2DG_rep3
This SubSeries is part of SuperSeries:
GSE139208 Host succinate is a signal for activation of Salmonella virulence during intracellular infection
Relations
BioProject PRJNA578744
SRA SRP226510

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139205_RAW.tar 5.2 Mb (http)(custom) TAR (of TXT)
GSE139205_bac_data_matrix.txt.gz 144.5 Kb (ftp)(http) TXT
GSE139205_host_data_matrix.txt.gz 3.5 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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