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| Status |
Public on Apr 28, 2020 |
| Title |
Genome-wide maps of histone modification and chromatin remodeler binding in mouse calvaria derived stromal cell line (OP9) |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We have used chromatin immunoprecipitation followed by high throughput sequencing to map regions of chromatin remodeler and histone modification state. We have used this data to understand the global distribution in stromal cell and probable mechanism of transcriptional regulation.
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| Overall design |
Binding profiles of two unique and one core subunit of ATP-ase dependent chromatin remodeler PBAF along with histone modification mark H3K27ac , in duplicate, in shCtrl and shPbrm1 stable cell line has been studied.
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| |
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| Contributor(s) |
Sengupta A |
| Citation(s) |
32348751 |
| |
| Submission date |
Oct 21, 2019 |
| Last update date |
Jul 29, 2020 |
| Contact name |
Amitava Sengupta |
| E-mail(s) |
sayantani0904@gmail.com
|
| Phone |
+91 9681155400
|
| Organization name |
CSIR - Indian Institute of Chemical Biology (Translational Research Unit of Excellence)
|
| Department |
Cancer Biology & Inflammatory Disorder Division
|
| Lab |
Stem Cell & Leukemia Lab
|
| Street address |
CN 6, Sector V, Salt Lake
|
| City |
Kolkata |
| State/province |
West Bengal |
| ZIP/Postal code |
700091 |
| Country |
India |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (14)
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| Relations |
| BioProject |
PRJNA578755 |
| SRA |
SRP226518 |
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