|
| Status |
Public on Jun 11, 2020 |
| Title |
Integrated analysis of DNA methylation, chromatin accessibility, transcription factor binding, and gene expression in large collections of breast cancer cell lines and patient tumors |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
32816914, 35221336 |
| |
| Submission date |
Jun 10, 2020 |
| Last update date |
Mar 30, 2022 |
| Contact name |
Katherine E Varley |
| E-mail(s) |
kt.varley@hci.utah.edu
|
| Organization name |
Huntsman Cancer Institute University of Utah
|
| Department |
Department of Oncological Sciences
|
| Lab |
Varley Lab
|
| Street address |
2000 Circle of Hope, Room 3719
|
| City |
Salt Lake City |
| State/province |
UT |
| ZIP/Postal code |
84112 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL10999 |
Illumina Genome Analyzer IIx (Homo sapiens) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
|
| Samples (58)
|
|
| This SuperSeries is composed of the following SubSeries: |
| GSE152201 |
RNA-seq of DEX induced and ethanol control Basal-like breast cancer cell lines |
| GSE152202 |
Reduced representation bisulfite sequencing (RRBS) of breast cancer cell lines |
| GSE152203 |
STAT3 and GR cooperate to drive basal-like triple negative breast cancer gene expression and proliferation |
|
| Relations |
| BioProject |
PRJNA638624 |
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