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GEO accession:
Series GSE152735
Query DataSets for GSE152735
Status
Public on Feb 11, 2023
Title
Genome-wide chromatin profiles of PBRM1
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
37095322
Submission date
Jun 18, 2020
Last update date
Nov 13, 2023
Contact name
Xiaosai Yao
E-mail(s)
xiaosai.yao@gmail.com, yao.xiaosai@gene.com
Phone
+65 68088271
Organization name
Genome Institute of Singapore
Street address
60 Biopolis Street, Genome, #02-01
City
Singapore
ZIP/Postal code
138672
Country
Singapore
Platforms (5)
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GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL20795
HiSeq X Ten (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (170)
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GSM4623471
PBRM1_786O_PBRM1WT_ChIPSeq_Rep1
GSM4623472
PBRM1_786O_PBRM1KO_ChIPSeq_Rep1
GSM4623475
ARID2_786O_PBRM1WT_ChIPSeq_Rep1
GSM4623476
ARID2_786O_PBRM1KO_ChIPSeq_Rep1
GSM4623477
SMARCA4_786O_PBRM1WT_ChIPSeq_Rep1
GSM4623478
SMARCA4_786O_PBRM1KO_ChIPSeq_Rep1
GSM4623479
H3K27ac_786O_PBRM1WT_ChIPSeq
GSM4623480
H3K27ac_786O_PBRM1KO_ChIPSeq
GSM4623481
H3K4me3_786O_PBRM1WT_ChIPSeq
GSM4623482
H3K4me3_786O_PBRM1KO_ChIPSeq
GSM4623483
H3K14ac_786O_PBRM1WT_ChIPSeq
GSM4623484
H3K14ac_786O_PBRM1KO_ChIPSeq
GSM4623485
Pol_II_786O_PBRM1WT_ChIPSeq
GSM4623486
Pol_II_786O_PBRM1KO_ChIPSeq
GSM4623487
SMARCC1_786O_ChIPSeq
GSM4623488
ARID1A_786O_ChIPSeq
GSM4623489
Input_SE_786O_PBRM1WT_ChIPSeq
GSM4623490
Input_SE_786O_PBRM1KO_ChIPSeq
GSM4623491
Input_PE_786O_PBRM1WT_Rep1
GSM4623492
Input_PE_786O_PBRM1KO_Rep1
GSM4623493
Input_PE_786O_PBRM1WT(for ARID1A and SMARCC1)
GSM4623494
PBRM1_NCC2112_EV_ChIPSeq
GSM4623495
PBRM1_NCC2112_PBRM1_ChIPSeq
GSM4623496
Input_NCC2112_EV_ChIPSeq
GSM4623497
Input_NCC2112_PBRM1_ChIPSeq
GSM4623498
PBRM1_NCC432_EV_ChIPSeq
GSM4623499
PBRM1_NCC432_PBRM1_ChIPSeq
GSM4623500
Input_NCC432_EV_ChIPSeq
GSM4623501
Input_NCC432_PBRM1_ChIPSeq
GSM4623502
PBRM1_NCC010_EV_ChIPSeq
GSM4623503
PBRM1_NCC010_PBRM1_ChIPSeq
GSM4623504
Input_NCC010_EV_ChIPSeq
GSM4623505
Input_NCC010_PBRM1_ChIPSeq
GSM4623506
PBRM1_A498_ChIPSeq
GSM4623507
Input_A498_ChIPSeq
GSM4623508
PBRM1_HK2_ChIPSeq
GSM4623509
Input_HK2_ChIPSeq
GSM4623510
PBRM1_PCS400_ChIPSeq
GSM4623511
Input_PCS400_ChIPSeq
GSM4625382
786O_WT_Rep1
GSM4625383
786O_WT_Rep2
GSM4625384
786O_KO_Rep1
GSM4625385
786O_KO_Rep2
GSM4625390
HK2_WT_Rep1
GSM4625391
HK2_WT_Rep2
GSM4625392
HK2_KO_Rep1
GSM4625393
HK2_KO_Rep2
GSM4625394
NCC2112_EV_Rep1
GSM4625395
NCC2112_EV_Rep2
GSM4625396
NCC2112_PBRM1_Rep1
GSM4625397
NCC2112_PBRM1_Rep2
GSM4625402
NCC432_EV_Rep1
GSM4625403
NCC432_EV_Rep2
GSM4625404
NCC432_PBRM1_Rep1
GSM4625405
NCC432_PBRM1_Rep2
GSM4625406
786O_KO_EV_Rep1
GSM4625407
786O_KO_EV_Rep2
GSM4625408
786O_KO_EV_Rep3
GSM4625409
786O_KO_PBRM1_Rep1
GSM4625410
786O_KO_PBRM1_Rep2
GSM4625411
786O_KO_PBRM1_Rep3
GSM6063434
786O_WT_NTC_Rep1
GSM6063435
786O_WT_NTC_Rep2
GSM6063436
786O_WT_shRELA_Rep1
GSM6063437
786O_WT_shRELA_Rep2
GSM6063438
786O_KO_NTC_Rep1
GSM6063439
786O_KO_NTC_Rep2
GSM6063440
786O_KO_shRELA_Rep1
GSM6063441
786O_KO_shRELA_Rep2
GSM6063442
769-P control 1 [SAM24314118]
GSM6063443
769-P control 2 [SAM24314119]
GSM6063444
769-P control 3 [SAM24314120]
GSM6063445
769-P control 4 [SAM24314121]
GSM6063446
769-P gPBRM1 1 [SAM24314122]
GSM6063447
769-P gPBRM1 2 [SAM24314123]
GSM6063448
769-P gPBRM1 3 [SAM24314124]
GSM6063449
769-P gPBRM1 4 [SAM24314125]
GSM6063450
769-P gARID2 1 [SAM24314126]
GSM6063451
769-P gARID2 2 [SAM24314127]
GSM6063452
769-P gARID2 3 [SAM24314128]
GSM6067340
PBRM1_786O_PBRM1WT_ChIPSeq_Rep2
GSM6067341
PBRM1_786O_PBRM1KO_ChIPSeq_Rep2
GSM6067343
PBRM1_786O_PBRM1KO_ChIPSeq_Rep3
GSM6067348
ARID2_786O_PBRM1WT_ChIPSeq_Rep2
GSM6067349
ARID2_786O_PBRM1KO_ChIPSeq_Rep2
GSM6067350
SMARCA4_786O_PBRM1WT_ChIPSeq_Rep2
GSM6067351
SMARCA4_786O_PBRM1KO_ChIPSeq_Rep2
GSM6067352
ARID1A_786O_PBRM1WT_ChIPSeq_Rep1
GSM6067353
ARID1A_786O_PBRM1KO_ChIPSeq_Rep1
GSM6067354
ARID1A_786O_PBRM1WT_ChIPSeq_Rep2
GSM6067355
ARID1A_786O_PBRM1KO_ChIPSeq_Rep2
GSM6067356
BRD9_786O_PBRM1WT_ChIPSeq_Rep1
GSM6067357
BRD9_786O_PBRM1KO_ChIPSeq_Rep1
GSM6067358
BRD9_786O_PBRM1WT_ChIPSeq_Rep2
GSM6067359
BRD9_786O_PBRM1KO_ChIPSeq_Rep2
GSM6067360
RELA_786O_PBRM1WT_ChIPSeq_Rep1
GSM6067361
RELA_786O_PBRM1KO_ChIPSeq_Rep1
GSM6067362
RELA_786O_PBRM1WT_ChIPSeq_Rep2
GSM6067363
RELA_786O_PBRM1KO_ChIPSeq_Rep2
GSM6067364
RELA_786O_PBRM1WT_ChIPSeq_Rep3
GSM6067365
RELA_786O_PBRM1KO_ChIPSeq_Rep3
GSM6067366
H3K4me1_786O_PBRM1WT_ChIPseq_Rep1
GSM6067367
H3K4me1_786O_PBRM1KO_ChIPseq_Rep1
GSM6067368
H3K4me1_786O_PBRM1WT_ChIPseq_Rep2
GSM6067369
H3K4me1_786O_PBRM1KO_ChIPseq_Rep2
GSM6067370
Input_PE_786O_PBRM1WT_Rep2
GSM6067371
Input_PE_786O_PBRM1KO_Rep2
GSM6067372
Input_PE_786O_PBRM1WT_Rep3
GSM6067373
Input_PE_786O_PBRM1KO_Rep3
GSM6067374
Input_PE_786O_PBRM1WT_Rep4
GSM6067375
Input_PE_786O_PBRM1KO_Rep4
GSM6067376
Input_PE_786O_PBRM1WT_Rep5
GSM6067377
Input_PE_786O_PBRM1KO_Rep5
GSM6918710
PBRM1_786O_PBRM1WT_ChIPSeq_Rep3
GSM6918711
BRD7_786O_PBRM1WT_ChIPSeq_Rep1
GSM6918712
BRD7_786O_PBRM1KO_ChIPSeq_Rep1
GSM6918713
BRD7_786O_PBRM1WT_ChIPSeq_Rep2
GSM6918714
BRD7_786O_PBRM1KO_ChIPSeq_Rep2
GSM6918819
RELA_786O_PBRM1WT_DMSO_9hr_ChIPSeq_rep1
GSM6918820
RELA_786O_PBRM1WT_BTZ_9hr_ChIPSeq_rep1
GSM6918821
RELA_786O_PBRM1KO_DMSO_9hr_ChIPSeq_rep1
GSM6918822
RELA_786O_PBRM1KO_BTZ_9hr_ChIPSeq_rep1
GSM6918823
RELA_786O_PBRM1WT_DMSO_9hr_ChIPSeq_rep2
GSM6918824
RELA_786O_PBRM1WT_BTZ_9hr_ChIPSeq_rep2
GSM6918825
RELA_786O_PBRM1KO_DMSO_9hr_ChIPSeq_rep2
GSM6918826
RELA_786O_PBRM1KO_BTZ_9hr_ChIPSeq_rep2
GSM6918827
SMARCA4_786O PBRM1WT_9hr_DMSO_ChIPSeq_rep1
GSM6918828
SMARCA4_786O PBRM1WT_9hr_BTZ_ChIPSeq_rep1
GSM6918829
SMARCA4_786O PBRM1KO_9hr_DMSO_ChIPSeq_rep1
GSM6918830
SMARCA4_786O PBRM1KO_9hr_BTZ_ChIPSeq_rep1
GSM6918831
SMARCA4_786O PBRM1WT_9hr_DMSO_ChIPSeq_rep2
GSM6918832
SMARCA4_786O PBRM1WT_9hr_BTZ_ChIPSeq_rep2
GSM6918833
SMARCA4_786O PBRM1KO_9hr_DMSO_ChIPSeq_rep2
GSM6918834
SMARCA4_786O PBRM1KO_9hr_BTZ_ChIPSeq_rep2
GSM6918835
SMARCA4_786O PBRM1WT_24hr_DMSO_ChIPSeq_rep1
GSM6918836
RELA_786O PBRM1WT_24hr_DMSO_ChIPSeq_rep1
GSM6918837
SMARCA4_786O PBRM1WT_ATPasei_24hr_ChIPSeq_rep1
GSM6918838
RELA_786OPBRM1WT_ATPasei_24hr__ChIPSeq_rep1
GSM6918839
SMARCA4_786O PBRM1KO_DMSO_24hr_ChIPSeq_rep1
GSM6918840
RELA_786O PBRM1KO_DMSO_24hr__ChIPSeq_rep1
GSM6918841
SMARCA4_786O PBRM1KO_ATPasei_24hr_ChIPSeq_rep1
GSM6918842
RELA_786O PBRM1KO_ATPasei_24hr_ChIPSeq_rep1
GSM6918843
SMARCA4_786O PBRM1WT_DMSO_24hr_ChIPSeq_rep2
GSM6918844
RELA_786O PBRM1WT_DMSO_24hr_ChIPSeq_rep2
GSM6918845
SMARCA4_786O PBRM1WT_ATPasei_24hr_ChIPSeq_rep2
GSM6918846
RELA_786O PBRM1WT_ATPasei_24hr_ChIPSeq_rep2
GSM6918847
SMARCA4_786O PBRM1KO_DMSO_24hr__ChIPSeq_rep2
GSM6918848
RELA_786O PBRM1KO_DMSO_24hr__ChIPSeq_rep2
GSM6918849
SMARCA4_786O PBRM1KO_ATPasei_24hr__ChIPSeq_rep2
GSM6918850
RELA_786O PBRM1KO_ATPasei_24hr__ChIPSeq_rep2
GSM6918851
786O_PBRM1WT_DMSO_9hr_rep1
GSM6918852
786O_PBRM1WT_DMSO_9hr_rep2
GSM6918853
786O_PBRM1WT_DMSO_9hr_rep3
GSM6918854
786O_PBRM1WT_BTZ_9hr_rep1
GSM6918855
786O_PBRM1WT_BTZ_9hr_rep2
GSM6918856
786O_PBRM1WT_BTZ_9hr_rep3
GSM6918857
786O_PBRM1KO_DMSO_9hr_rep1
GSM6918858
786O_PBRM1KO_DMSO_9hr_rep2
GSM6918859
786O_PBRM1KO_DMSO_9hr_rep3
GSM6918860
786O_PBRM1KO_BTZ_9hr_rep1
GSM6918861
786O_PBRM1KO_BTZ_9hr_rep2
GSM6918862
786O_PBRM1KO_BTZ_9hr_rep3
GSM6918863
786O_PBRM1WT_DMSO_24hr_rep1
GSM6918864
786O_PBRM1WT_DMSO_24hr_rep2
GSM6918865
786O_PBRM1WT_ATPasei_24hr_rep1
GSM6918866
786O_PBRM1WT_ATPasei_24hr_rep2
GSM6918867
786O_PBRM1KO_DMSO_24hr_rep1
GSM6918868
786O_PBRM1KO_DMSO_24hr_rep2
GSM6918869
786O_PBRM1KO_ATPasei_24hr_rep1
GSM6918870
786O_PBRM1KO_ATPasei_24hr_rep2
This SuperSeries is composed of the following SubSeries:
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GSE152681
Genome-wide chromatin profiles of PBRM1 [ChIP-Seq]
GSE152734
Genome-wide chromatin profiles of PBRM1 [RNA-Seq]
GSE222244
Genome-wide chromatin profiles of PBRM1 Drug treatment [ChIP-Seq]
GSE222245
Genome-wide chromatin profiles of PBRM1 Drug treatment [RNA-Seq]
Relations
BioProject
PRJNA640292
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE152735_RAW.tar
93.7 Mb
(http)
(custom)
TAR (of BED, NARROWPEAK)
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