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Series GSE16006 Query DataSets for GSE16006
Status Public on Jan 20, 2010
Title MicroRNAs regulated by DAC
Organisms Homo sapiens; Mus musculus; Rattus norvegicus
Experiment type Non-coding RNA profiling by array
Summary Aberrant expression of microRNA (miRNA) has been reported in various cancers. To clarify the role of miRNA in gastric carcinogenesis, we performed miRNA microarray analysis and investigated expressional changes of miRNAs in a 5-aza-2'-deoxycytidine (DAC)-treated gastric cancer cell line, KATO-ІІІ.
 
Overall design A gastric cancer cell line KATO-III was daily treated with DAC for 72 h. MiRNAs up- or down-regulated by DAC was compared with unteated KATO-III.

The list of all up-regulated miRNAs in KATO-III by drug treatment can be found in supplementary file, GSE16006_miRNA_list.txt, below.
 
Contributor(s) Hashimoto Y, Akiyama Y, Otsubo T, Shimada S, Yuasa Y
Citation(s) 20080834, 23667495
Submission date May 07, 2009
Last update date Aug 13, 2019
Contact name Yutaka Hashimoto
E-mail(s) yhashi.monc@live.jp
Organization name Tokyo Medical and Dental University Graduate School
Department Molecular Oncology
Lab Yasuhito Yuasa
Street address 1-5-45
City Yushima, Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-8510
Country Japan
 
Platforms (1)
GPL5106 mirVANA miRNA Bioarray V2
Samples (2)
GSM393971 KATO-III control
GSM400576 KATO-III_DAC
Relations
BioProject PRJNA115427

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16006_RAW.tar 16.2 Mb (http)(custom) TAR (of TIFF, TXT)
GSE16006_miRNA_list.txt.gz 106 b (ftp)(http) TXT
GSE16006_miRNA_list_README.txt 244 b (ftp)(http) TXT
Processed data included within Sample table

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