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Series GSE161404 Query DataSets for GSE161404
Status Public on Nov 01, 2023
Title Otsuka Long-Evans Tokushima fatty rats with Roux-en-Y gastric bypass surgery
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Objective: The mechanisms underlying type 2 diabetes resolution after Roux-en-Y gastric bypass (RYGB) are unclear. We previously observed temporal migrations in small intestinal glycolysis, suggesting that glucose excretion may contribute to glucose homeostasis. This study aimed to evaluate the mechanisms underlying serum glucose excretion and its contribution to glucose homeostasis by using 2-deoxy-2-[18F]-fluoro-D-glucose (FDG) positron emission tomography. Design: FDG distribution in reconstructed intestinal limbs of sham- or RYGB-operated obese rats was identified. RNA sequencing was performed in areas of high or low FDG uptake.
 
Overall design RNA-seq was performed to investigate the relative effects of RYGB gastric bypass intervention on the small intestine. N=3 replicates were profiled.
 
Contributor(s) Ku C, Cho A, Kang C, Kwon I
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Submission date Nov 13, 2020
Last update date Nov 01, 2023
Contact name Chan Woo Kang
E-mail(s) azaapower1@gmail.com
Organization name Yonsei University
Street address 50 Yonsei-ro Seodaemun-gu
City Seoul
State/province Seoul
ZIP/Postal code 03722
Country South Korea
 
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (9)
GSM4906606 Sham_ileum_replicate1
GSM4906607 Sham_ileum_replicate2
GSM4906608 Sham_ileum_replicate3
Relations
BioProject PRJNA678226
SRA SRP292476

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE161404_RYGB_ileum_FDG_decreased_vs_RYGB_ileum_FDG_increased.txt.gz 360.8 Kb (ftp)(http) TXT
GSE161404_RYGB_ileum_FDG_increased_vs_sham.txt.gz 357.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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