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Status |
Public on May 18, 2022 |
Title |
Genome-wide maps of FOXK2 binding sites in ovarian cancer cell line OVCAR5 and expression profile of FOXK2 knockdown OVCAR5 cells (ChIP-seq) |
Organism |
Homo sapiens |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
This study characterized the genome-wide binding of FOXK2 in ovarian cancer (OC) cell OVCAR-5 and investigated the expression profile of OVCAR5 cells with FOXK2 knocking-down.
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Overall design |
Two datasets are included: 1) Examined transcriptome of OVCAR5 cells transduced with control shRNA (shCtrl) and FOXK2-targeting shRNA (shFOXK2) in OVCAR5 cells (in biological duplicates); 2) Determined the genome-wide bindng and occupancy profile of FOXK2 in OVCAR5 cells by ChIP-seq (in biological duplicates).
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Contributor(s) |
Zhang Y, Wang Y, Zhao G, Matei D |
Citation(s) |
35349489 |
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Submission date |
May 03, 2021 |
Last update date |
May 20, 2022 |
Contact name |
Daniela Matei |
E-mail(s) |
daniela.matei@northwestern.edu
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Organization name |
Northwestern University
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Department |
Ob-Gyn
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Street address |
303 E Superior St
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City |
Chicago |
State/province |
Illinois |
ZIP/Postal code |
60601 |
Country |
USA |
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Platforms (1) |
GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
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Samples (4)
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This SubSeries is part of SuperSeries: |
GSE173780 |
Genome-wide maps of FOXK2 binding sites in ovarian cancer cell line OVCAR5 and expression profile of FOXK2 knockdown OVCAR5 cells |
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Relations |
BioProject |
PRJNA727006 |
SRA |
SRP318249 |