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Series GSE173852 Query DataSets for GSE173852
Status Public on Jun 14, 2021
Title A role for the ribosome-associated complex in activation of the IRE1 branch of UPR
Organism Homo sapiens
Experiment type Other
Summary The ubiquitous ribosome-associated complex (RAC) is a chaperone that spans ribosomes, making contacts near both the polypeptide exit tunnel and the decoding center, a position prime for sensing and coordinating translation and folding. Loss of RAC is known to result in growth defects and sensitization to translational and osmotic stresses. However, the physiological substrates of RAC and the mechanism(s) by which RAC is involved in responding to specific stresses in higher eukaryotes remain obscure. Data presented here uncover an essential function of mammalian RAC in the unfolded protein response (UPR). Knockdown of RAC sensitizes mammalian cells to ER stress and selectively interferes with IRE1 branch activation. Higher-order oligomerization of the IRE1α kinase/endoribonuclease depends upon RAC. These results reveal a surveillance function for RAC in the UPR: modulating IRE1α clustering as required for endonuclease activation and splicing of the substrate Xbp1 mRNA.
 
Overall design Ribosome profiling of XBP1 in the Thapsigargin-induced ER stress condition in HEK293 cells
 
Contributor(s) Yoon J, Wu I, Skach W, Thomas P
Citation(s) 34107246
Submission date May 04, 2021
Last update date Jun 16, 2021
Contact name Jae Seok YOON
Organization name Cystic Fibrosis Foundation
Department CFFT Lab
Street address 44 Hartwell Avenue
City Lexington
State/province MA
ZIP/Postal code 02421
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (16)
GSM5281836 HEK293 si-Control DMSO rep1
GSM5281837 HEK293 si-Control DMSO rep2
GSM5281838 HEK293 si-Hsp70L1 DMSO rep1
Relations
BioProject PRJNA727298
SRA SRP318452

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Supplementary file Size Download File type/resource
GSE173852_RAW.tar 110.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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