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Series GSE173889 Query DataSets for GSE173889
Status Public on Sep 27, 2023
Title RIP-seq of NAT10 interacted cellular and KSHV transcripts in iSLK-KSHV cells
Organisms Homo sapiens; Human gammaherpesvirus 8
Experiment type Other
Summary Flag-RIP-seq was performed in NAT10-Flag overexpressing iSLK-KSHV cells.
 
Overall design NAT10-Flag and its control RFP-Flag was overexpressed in iSLK-KSHV cells, the Flag-RIP-seq was performed.
 
Contributor(s) Yan Q, Zhou J, Wang Z, Ding X, Ma X, Li W, Jia X, Gao S, Lu C
Citation(s) 37816771
Submission date May 05, 2021
Last update date Oct 12, 2023
Contact name Liuxue Sheng
E-mail(s) shengliuxue@gmail.com
Organization name Nanjing Medical University
Street address Tian Yuan East Road
City Nanjing
State/province Jiangsu
ZIP/Postal code 211166
Country China
 
Platforms (1)
GPL30065 Illumina NovaSeq 6000 (Homo sapiens; Human gammaherpesvirus 8)
Samples (12)
GSM5282396 iSLK-RGB-pCDH-RFP_rep1-input
GSM5282397 iSLK-RGB-pCDH-RFP_rep2-input
GSM5282398 iSLK-RGB-pCDH-RFP_rep3-input
Relations
BioProject PRJNA727481
SRA SRP318534

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173889_All_reads_counts.txt.gz 4.9 Mb (ftp)(http) TXT
GSE173889_NAT10_peaks.txt.gz 622.6 Kb (ftp)(http) TXT
GSE173889_RFP_peaks.txt.gz 549.9 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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