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Status |
Public on Mar 09, 2022 |
Title |
Analysis of RA vs 4-oxo-RA gene expression regulation in Xenopus laevis |
Organism |
Xenopus laevis |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
We analyzed anterior halves of NF stage 15 embryos that were treated with 10uM DMSO (control), or 1uM RA and 10uM 4-oxo-RA (experimental) for changes in gene expression induced by the two mophogens. RNA-sequencing revealed significant overlap in genes upregulated by both RA and 4-oxo-RA, and to a lesser extent, those downregulated by them. We report all Zic-1 targets described in accompanying manuscript to be regulated by both RA and 4-oxo-RA.
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Overall design |
Examination of gene expression changes induced by RA and 4-oxo-RA in anterior regions of neurulating NF stage 15 Xenopus laevis embryos
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Contributor(s) |
Dubey A, Saint-Jeannet J, Zappile P, Lin Z |
Citation(s) |
34536327 |
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Submission date |
Jul 16, 2021 |
Last update date |
Mar 10, 2022 |
Contact name |
Ziyan Lin |
E-mail(s) |
ziyanlin2352@gmail.com
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Organization name |
NYU Grossman School of Medicine
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Department |
Applied Bioinformatics Laboratories
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Street address |
227 E 30th St.
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City |
New York |
State/province |
NY |
ZIP/Postal code |
10016 |
Country |
USA |
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Platforms (1) |
GPL17682 |
Illumina HiSeq 2000 (Xenopus laevis) |
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Samples (9)
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Relations |
BioProject |
PRJNA747290 |
SRA |
SRP328713 |