|
| Status |
Public on Aug 09, 2021 |
| Title |
H3K27ac ChIP-seq of MCF10A progression series |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This study takes an unbiased global analysis of super-enhancers that are acquired or lost in progression of breast cancer using the MCF10a progression series
|
| |
|
| Overall design |
Using the enhancer mark H3K27ac, we performed ChIP seq to identify enhancers, and subesquently, using ROSE to identify super-enhancers acquired or lost in progression of breast cancer.
|
| |
|
| Contributor(s) |
Ropri A, Eng J |
| Citation(s) |
34717732 |
| |
| Submission date |
Aug 05, 2021 |
| Last update date |
Nov 07, 2023 |
| Contact name |
Ali Salman Ropri |
| E-mail(s) |
aropri@albany.edu
|
| Organization name |
SUNY Albany
|
| Department |
Biomedical Sciences
|
| Lab |
Ali Salman Ropri
|
| Street address |
12 Lakeshore Dr., Apt 1B
|
| City |
Watervliet |
| State/province |
NY |
| ZIP/Postal code |
12189 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
|
| Samples (16)
|
|
| Relations |
| BioProject |
PRJNA752355 |
| SRA |
SRP331234 |
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