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Series GSE188907 Query DataSets for GSE188907
Status Public on Nov 20, 2021
Title DamID transcriptional profiling identifies the Snail/Scratch transcription factor Kahuli as an Alk target in the Drosophila visceral mesoderm
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We used targeted DamID (TaDa) to identify Alk targets in embryos overexpressing Jeb versus embryos with abrogated Alk activity, revealing differentially expressed genes, including the Snail/Scratch family transcription factor Kahuli (Kah)
 
Overall design Examination of Alk targets via trancriptional profiling with DamID by Alk activation/deactivation using generic and specific promoters
 
Contributor(s) Palmer R, Lekholm EL, Mendoza P, Basu S
Citation(s) 34905617
Submission date Nov 15, 2021
Last update date Feb 02, 2022
Contact name Erik Larsson
E-mail(s) erik.larsson@gu.se
Organization name University of Gothenburg
Street address Medicinaregatan 9A
City Gothenburg
ZIP/Postal code 40530
Country Sweden
 
Platforms (1)
GPL23702 HiSeq X Ten (Drosophila melanogaster)
Samples (18)
GSM5691756 Dam-PolII expression with bap-GAL4 promoter replicate 1
GSM5691757 Dam-PolII expression with bap-GAL4 promoter replicate 2
GSM5691758 Dam-PolII expression with bap-GAL4 promoter replicate 3
Relations
BioProject PRJNA780587
SRA SRP346249

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE188907_GATC_counts.txt.gz 6.6 Mb (ftp)(http) TXT
GSE188907_bj_peak.txt.gz 1.1 Mb (ftp)(http) TXT
GSE188907_bn_peak.txt.gz 2.1 Mb (ftp)(http) TXT
GSE188907_tj_peak.txt.gz 1.2 Mb (ftp)(http) TXT
GSE188907_tn_peak.txt.gz 2.6 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record
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