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Series GSE19306 Query DataSets for GSE19306
Status Public on Sep 11, 2013
Title Hepatocellular carcinomas (HCC) in mice transduced in utero with feline immunodeficiency virus-based vectors (expression)
Organism Mus musculus
Experiment type Expression profiling by array
Summary Fetal mice (16 days gestation) were administered feline immunodeficiency virus (FIV)-based lentiviral viral particles containing the gene encoding GFP. Six liver tumors developed in three mice between the ages of 273 and 484 days, each mouse developed 2 tumors. These tumors and non-tumorous liver tissue from the same animals and animals that did not develop tumors and untransduced controls were harvested and microarrays were performed on total RNA extracted from these samples. We were interested in investigating the link between lentiviral integration and gene expression.

Keywords: Comparison of HCC with non-tumorous liver tissue adjacent to tumor.
 
Overall design Fourteen samples were analyzed in total: Two tumors from each of three mice (6 samples); surrounding non-tumorous liver tissue from each of these three mice (3 samples); two female mice and one male mouse that were transduced and did not develop tumors (3 samples); one female and one male untransduced mouse (2 samples). The samples were performed in two runs: one containing the samples from female mice and the second containing samples from male mice.
 
Contributor(s) Condiotti R, Goldenberg D, Schnitzer-Perlman T, Waddington S, Buckley S, Simerzin A, Bester A, Kerem B, Giladi H, Galun E, Themis M
Citation(s) 23982166
Submission date Dec 03, 2009
Last update date May 04, 2018
Contact name Reba Condiotti
E-mail(s) reba@hadassah.org.il
Organization name Hadassah Medical Center
Department Goldyne Savad Institute of Gene Therapy
Street address P.O.B. 12000
City Jerusalem
ZIP/Postal code 91120
Country Israel
 
Platforms (1)
GPL8321 [Mouse430A_2] Affymetrix Mouse Genome 430A 2.0 Array
Samples (14)
GSM479809 non-tumorous tissue surrounding tumors from male M1
GSM479810 tumor 1 from male M1
GSM479811 tumor 2 from male M1
Relations
BioProject PRJNA120899

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE19306_RAW.tar 26.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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