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Series GSE20671 Query DataSets for GSE20671
Status Public on Jun 15, 2010
Title Effects of RGMc on BMP2 and BMP6-mediated Gene Expression in Hep3B Liver Cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Mutations in repulsive guidance molecule c (RGMc) / hemojuvelin (HJV) cause juvenile hemochromatosis, an aggravated iron overload disorder that presents early in life. Patients with juvenile hemochromatosis, and RGMc knockout mice, have diminished expression of the key iron-regulatory peptide, hepcidin. This suggests that RGMc plays a critical role in the regulation of iron homeostasis; however the mechanisms of RGMc actions are unknown. Recent studies have shown that RGMc directly binds to the growth factors, bone morphogenetic protein 2 and 6 (BMP2 and BMP6), and it is possible that this interaction regulates aspects of iron metabolism.
We used microarrays to examine the effects of RGMc on BMP2- and BMP6-mediated gene expression.
 
Overall design In our experimental model we treated Hep3B liver cells that had been serum starved for 16 hours as follows: (1) un-treated, (2) BMP2, (3) BMP2 + 10-fold molar excess of Noggin (a potent BMP2 inhibitor), (4) BMP2 + 20-fold molar excess of RGMc, (5) BMP6, (6) BMP6 + 10-fold molar excess of Noggin, (7) BMP6 + 20-fold molar excess of RGMc. Binding was allowed to proceed for BMP and Noggin or RGMc for 3 hr at 20°C prior to treatment of Hep3B cells. Treatment time was 4 hr at which cells were collected for RNA isolation.
 
Contributor(s) Nili M, Rotwein P
Citation(s) 20530805
Submission date Mar 08, 2010
Last update date Jul 26, 2018
Contact name Mahta Nili
Organization name Oregon Health & Science University
Department Biochemistry and Molecular Biology
Street address 3181 SW Sam Jackson Park Road
City Portland
State/province OR
ZIP/Postal code 97239
Country USA
 
Platforms (1)
GPL6244 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
Samples (14)
GSM518514 liver cells_untreated_rep1
GSM518515 liver cells_untreated_rep2
GSM518516 liver cells_bmp2_rep1
Relations
BioProject PRJNA124929

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Supplementary file Size Download File type/resource
GSE20671_RAW.tar 61.3 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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