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Series GSE208744 Query DataSets for GSE208744
Status Public on Sep 19, 2022
Title Caspase-8 and FADD prevent spontaneous ZBP1 expression and necroptosis 
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Caspase-8 and FADD play key roles in the regulation of cell death by necroptosis. The absence of either protein results in early embryonic lethality due to the activation of the kinase RIPK3 and its phosphorylation of the necroptosis executioner, MLKL. We genetically engineered and characterized a mouse model to monitor MLKL phosphorylation in the absence of necroptosis in vivo. Ablation of caspase-8 or FADD resulted in the transcriptional upregulation in several tissues of ZBP1, a cytosolic nucleic acid sensor capable of activating RIPK3, and ZBP1 was required for spontaneous phosphorylation of MLKL. Our findings provide a novel mechanism by which the FADD-Caspase-8 complex prevents necroptosis.
 
Overall design Here we performed RNAseq screening to identify gene expression in the absence or presence of Caspase-8 or FADD
 
Contributor(s) Rodriguez DA, Tummer B, Chen MJ, Crawford JC, Green DR
Citation(s) 36191211
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 AI044828 Survival Function of the Fadd-Caspase-8-Flip Complex ST. JUDE CHILDREN'S RESEARCH HOSPITAL DOUGLAS R GREEN
R35 CA231620 Mechanisms of Regulated Cell Death ST. JUDE CHILDREN'S RESEARCH HOSPITAL DOUGLAS R GREEN
R37 AI044828 Survival Function of the Fadd-Caspase-8-Flip Complex - MERIT Extension ST. JUDE CHILDREN'S RESEARCH HOSPITAL DOUGLAS R GREEN
P30 CA021765 Cancer Center Support Grant (CCSG) ST. JUDE CHILDREN'S RESEARCH HOSPITAL CHARLES ROBERTS
P30 CA006927 Comprehensive Cancer Center Program at Fox Chase Institute for Cancer Research JONATHAN D. CHERNOFF
R01 AI135025 Mechanism, Function, and Exploitation of Influenza A Virus-Activated Cell Death Institute for Cancer Research SIDDHARTH BALACHANDRAN
R01 AI144400 Targeting RIPK3 in Flu-Associated Lung Injury Institute for Cancer Research SIDDHARTH BALACHANDRAN
Submission date Jul 21, 2022
Last update date Dec 06, 2022
Contact name Douglas R Green
E-mail(s) douglas.green@stjude.org
Organization name St Jude Children's Research Hospital
Department Immunology
Lab Green lab
Street address 262 Danny Thomas Pl
City Memphis
State/province United States
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM6368760 MEFs Fadd and Mlkl knock-out rep 1
GSM6368761 MEFs Fadd and Mlkl knock-out rep 2
GSM6368762 MEFs Fadd and Mlkl knock-out rep 3
Relations
BioProject PRJNA860938

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE208744_RAW.tar 7.0 Mb (http)(custom) TAR (of TAB)
GSE208744_mERV_count.tab.gz 1.2 Mb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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