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| Status |
Public on Mar 20, 2023 |
| Title |
RNA-seq analysis of total RNA from inflorescence stems of Arabidopsis Col-0, ccr-1, fer-4 and ccr-1/fer-4 |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
A. thaliana lines with reduced lignin content through down-regulation of the lignin biosynthesis enzymes cinnamoyl CoA reductase (CCR) exhibit extensive cell wall remodeling which results in the release of a mixture of pectic oligosaccharide elicitors of pathogenesis-related (PR) protein gene expression through the salicylic acid signaling pathway. Loss of function of FERONIA, a CrRLK1-like subfamily receptor-like kinase resulted in loss of PR-1, -2 and- 5 gene activation in stems of the ccr1/fer-4 double mutant.
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| Overall design |
We utilized RNA-seq analysis of total RNA from inflorescence stems of WT, ccr-1, fer-4 and ccr-1/fer-4 to determine the extent to which loss of function of FERONIA affected the expression of other genes that are up-regulated in ccr1-3.
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| Contributor(s) |
Dixon RA, Liu C, Rao X |
| Citation(s) |
36897948 |
| Submission date |
Aug 08, 2022 |
| Last update date |
Mar 20, 2023 |
| Contact name |
Chang Liu |
| E-mail(s) |
nmgliuchang@gmail.com
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| Organization name |
University of North Texas
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| Street address |
1155 Union Circle #311428
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| City |
Denton |
| ZIP/Postal code |
76203-5017 |
| Country |
USA |
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| Platforms (1) |
| GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA867337 |
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