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Series GSE217926 Query DataSets for GSE217926
Status Public on Dec 25, 2023
Title The RHW1-ZCN4 regulatory pathway confers natural variation of husk leaf width in maize
Organism Zea mays
Experiment type Expression profiling by high throughput sequencing
Summary Maize husk leaf - the outer leafy layers covering the ear - modulates kernel yield and quality. Despite its importance, however, the genetic controls underlying husk leaf development remain elusive. Our previous genome-wide association study identified a single nucleotide polymorphism located in the gene RHW1 (Regulator of Husk leaf Width) that is significantly associated with husk leaf-width diversity in maize. Here, we further demonstrate that a polymorphic 18-bp InDel (insertion/deletion) variant in the 3' untranslated region of RHW1 alters its protein abundance and accounts for husk leaf width variation. RHW1 encodes a putative MYB-like transcriptional repressor. Disruption of RHW1 altered cell proliferation and resulted in a narrower husk leaf, whereas RHW1 overexpression yielded a wider husk leaf. RHW1 positively regulated the expression of ZCN4, a well-known TFL1-like protein involved in maize ear development. Dysfunction of ZCN4 reduced husk leaf width even in the context of RHW1 overexpression. The InDel variant in RHW1 is subject to selection and is associated with maize husk leaf adaption from tropical to temperate regions. Overall, our results identify that RHW1-ZCN4 regulates a pathway conferring husk leaf width variation at a very early stage of husk leaf development in maize.
 
Overall design RNA-seq liabraries were prepared using early developing ears (length, 0–0.5 cm) of rhw1-1, OE#1, and wild-type plants
 
Contributor(s) Xia A
Citation(s) 37403373
Submission date Nov 14, 2022
Last update date Apr 05, 2024
Contact name Aiai Xia
E-mail(s) sumlove@cau.edu.cn
Organization name China Agricultural University
Department Plant Genetics and Breeding
Lab Yan He Lab
Street address NO2 Yuanmingyuan West Road, Haidian, Beijing
City Beijing
ZIP/Postal code 100193
Country China
 
Platforms (1)
GPL25410 Illumina NovaSeq 6000 (Zea mays)
Samples (6)
GSM6730004 RHW1-WT-rep1
GSM6730005 RHW1-WT-rep2
GSM6730006 RHW1-crispr-rep1
Relations
BioProject PRJNA901414

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE217926_Raw_gene_counts.txt.gz 425.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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