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Series GSE23851 Query DataSets for GSE23851
Status Public on Aug 28, 2010
Title Altered Gene Expression in Human Adipose Stem Cells Cultured with Fetal Bovine Serum Compared to Human Supplements
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Mesenchymal stromal cells (MSCs) are promising candidates for innovative cell therapeutic applications. For clinical scale manufacturing regulatory agencies recommend to replace fetal bovine serum (FBS) commonly used in MSC expansion media as soon as equivalent alternative supplements are available. We already demonstrated that pooled blood group AB human serum (HS) and thrombin-activated platelet releasate plasma (tPRP) support the expansion of multipotent adipose tissue-derived MSCs (ASCs). Slight differences in size, growth pattern and adhesion prompted us to investigate the level of equivalence by compiling the transcriptional profiles of ASCs cultivated in these supplements. A whole genome gene expression analysis was performed and data verified by PCR and protein analyses. Microarray-based screening of 34,039 genes revealed 102 genes differentially expressed in ASCs cultured with FBS compared to HS or tPRP supplements. A significantly higher expression in FBS cultures was found for 90 genes (fold change .2). Only 12 of the 102 genes showed a lower expression in FBS compared to HS or tPRP cultures (fold change .0.5). Differences between cells cultivated in HS and tPRP were hardly evident. Supporting previous observations of reduced adhesion of cells cultivated in the human alternatives we detected a number of adhesion and extracellular matrix associated molecules expressed at lower levels in ASCs cultivated with human supplements. Confirmative assays analysing transcript or protein expression with selected genes supported these results. Likewise a number of mesodermal differentiation associated genes were higher expressed in cells grown in FBS. Quantifying adipogenic and osteogenic differentiation lacked to demonstrate a clear correlation to the supplement due to donor-sepcific variances. Our results emphasize the necessity of comparability studies as they indicate that FBS induces a culture adaptation exceeding that of ex vivo culture in human supplements and thus may contribute to the therapeutic potential.
 
Overall design Microarray hybridizations (Agilent: Whole Human Genome Oligo Microarray; 41k unique probe) were carried out with 5 µg Cy3 labeled cRNA and 5 µg Cy5 labeled cRNA, both prepared from each sample.
 
Contributor(s) Bieback K, Ha V, Hecker A, Grassl M, Kinzebach S, Solz H, Sticht C, Klüter H, Bugert P
Citation(s) 20572797
Submission date Aug 27, 2010
Last update date Dec 06, 2012
Contact name Karen Bieback
E-mail(s) karen.bieback@medma.uni-heidelberg.de
Organization name Institute of Transfusion Medicine and Immunology, Medical Faculty Mannheim, Heidelberg University
Department Institute of Transfusion Medicine and Immunology
Street address Ludolf-Krehl-Strasse 13-17
City Mannheim
ZIP/Postal code 68167
Country Germany
 
Platforms (1)
GPL1708 Agilent-012391 Whole Human Genome Oligo Microarray G4112A (Feature Number version)
Samples (21)
GSM588043 ASC_FBS_P2_rep1
GSM588044 ASC_tPRP_P2_rep1
GSM588045 ASC_HS_P2_rep1
Relations
BioProject PRJNA130555

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE23851_RAW.tar 5.8 Mb (http)(custom) TAR
Processed data included within Sample table

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