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Series GSE252444 Query DataSets for GSE252444
Status Public on Aug 27, 2024
Title CCL2-mediated Endothelial Injury Drives Cardiac Dysfunction in Long COVID [tissue]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Chronic endotheliitis and various cardiovascular co-morbidities are more likely to develop in patients who are recovering from a post-acute SARS-CoV-2 infection. Despite a growing body of clinical data suggesting that the endothelium could be the cause of both cardiac injury and the multi-organ damage found in COVID-19 patients, there is no clear link between endothelial (EC) dysfunction and increased cardiac risk during long COVID. Here, we studied long COVID-19-associated endotheliitis and its implications on cardiac dysfunction. Thrombotic vascular tissues from long COVID patients were harvested and profiled to identify the different mechanisms of viral-induced EC pathogenesis. Human induced pluripotent stem cell (iPSC)–derived ECs were leveraged to model endotheliitis in-a-dish after exposure to SARS-CoV-2, which showed similar EC dysfunction and upregulation of specific cytokines such as CCL2 and IL6, as seen in the primary ECs of long COVID patients. 3D fabricated cardiac organoids generated from iPSC-ECs and iPSC-derived cardiomyocytes (iPSC-CMs) were utilized to understand the pathological influence of endotheliitis on cardiac dysfunction. Notably, cardiac dysfunction was observed only in cardiac organoids that were fabricated with both iPSC-CMs and iPSC-ECs after exposure to SARS-CoV-2. Simultaneous profiling of chromatin accessibility and gene expression dynamics via integration of ATAC-seq and RNA-seq at a single cell resolution revealed CCL2 as the prime cytokine responsible for the non-endothelial “phenotype switching” and the impending cardiac dysfunction in cardiac organoids. This was further validated by high-throughput proteomics that showed CCL2 to be released only by cardiac organoids that were fabricated with iPSC-CMs and iPSC-ECs after SARS-CoV-2 infection. Lastly, disease modeling of the cardiac organoids as well as exposure of human ACE2 transgenic mice to SARS-CoV-2 spike proteins uncovered a putative mechanism for the cardiac dysfunction involving posttranslational modification of cardiac proteins driven by oxidative stress and inflammation. These results suggest that EC-released cytokines can contribute to the pathogenesis of long COVID-associated cardiac dysfunction, and thus a thorough clinical profiling of vascular health could help identify early signs of heart disease in COVID-19 patients.
 
Overall design Bulk was conducted on long COVID, healthy, and PAD tissues. scRNA-seq was conducted on human arteries that were collected from Long COVID patients that had undergone below-knee amputation. Similarly, scRNA-seq was conducted on arteries collected from NON-COVID patients that suffered from peripherial artery disease (PAD) and undergone below-knee amputation due to complete occlusion of their arteries.
 
Contributor(s) Wu D, Sayed N
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Submission date Jan 03, 2024
Last update date Aug 27, 2024
Contact name Nazish Sayed
E-mail(s) sayedns@stanford.edu
Organization name Stanford University
Street address 240 Pasteur Drive, 3500 BMI
City Palo Alto
State/province California
ZIP/Postal code 94303
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (9)
GSM8001521 Pt8
GSM8001522 Pt9
GSM8001523 HC6 1
This SubSeries is part of SuperSeries:
GSE252448 CCL2-mediated Endothelial Injury Drives Cardiac Dysfunction in Long COVID
Relations
BioProject PRJNA1060667

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Supplementary file Size Download File type/resource
GSE252444_tissuecombinedfeatureCounts.csv.gz 642.0 Kb (ftp)(http) CSV
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Raw data are available in SRA

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