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Series GSE257089 Query DataSets for GSE257089
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR164CYL)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing PHA-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR164CYL/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 24, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL22765 Illumina HiSeq 4000 (Caenorhabditis elegans)
Samples (2)
GSM8107077 TF ChIP-seq from whole organism (ENCLB448VMP)
GSM8107078 TF ChIP-seq from whole organism (ENCLB079GRS)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE257089_ENCFF029CNI_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257089_ENCFF097CZF_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257089_ENCFF101KSB_read-depth_normalized_signal_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257089_ENCFF260DLA_optimal_IDR_thresholded_peaks_ce10.bed.gz 20.2 Kb (ftp)(http) BED
GSE257089_ENCFF449BUV_peaks_and_background_as_input_for_IDR_ce10.bed.gz 770.7 Kb (ftp)(http) BED
GSE257089_ENCFF468YAV_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE257089_ENCFF481WOD_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257089_ENCFF513HQI_optimal_IDR_thresholded_peaks_ce11.bed.gz 19.7 Kb (ftp)(http) BED
GSE257089_ENCFF617VCS_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257089_ENCFF740UPC_read-depth_normalized_signal_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE257089_ENCFF756DNS_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE257089_ENCFF807HGC_optimal_IDR_thresholded_peaks_ce10.bigBed 79.9 Kb (ftp)(http) BIGBED
GSE257089_ENCFF897MUW_optimal_IDR_thresholded_peaks_ce11.bigBed 79.1 Kb (ftp)(http) BIGBED
GSE257089_ENCFF984GVY_peaks_and_background_as_input_for_IDR_ce11.bed.gz 770.5 Kb (ftp)(http) BED
GSE257089_RAW.tar 122.0 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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