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Series GSE257570

Query DataSets for GSE257570

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR844VCY)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing CEH-48-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR844VCY/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (2)

GPL13657	Illumina HiSeq 2000 (Caenorhabditis elegans)
GPL22765	Illumina HiSeq 4000 (Caenorhabditis elegans)

Samples (2)

GSM8108178	TF ChIP-seq from whole organism (ENCLB798MKY)
GSM8108179	TF ChIP-seq from whole organism (ENCLB857PQN)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE257570_ENCFF024QIS_read-depth_normalized_signal_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE257570_ENCFF049GIN_optimal_IDR_thresholded_peaks_ce11.bed.gz	42.1 Kb	(ftp)(http)	BED
GSE257570_ENCFF082JTL_peaks_and_background_as_input_for_IDR_ce10.bed.gz	763.2 Kb	(ftp)(http)	BED
GSE257570_ENCFF219RHZ_peaks_and_background_as_input_for_IDR_ce11.bed.gz	762.9 Kb	(ftp)(http)	BED
GSE257570_ENCFF268ICB_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257570_ENCFF361EMG_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257570_ENCFF425QRN_read-depth_normalized_signal_ce10.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE257570_ENCFF473GMP_optimal_IDR_thresholded_peaks_ce10.bigBed	124.5 Kb	(ftp)(http)	BIGBED
GSE257570_ENCFF579YIO_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE257570_ENCFF660PIQ_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257570_ENCFF768SZU_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE257570_ENCFF777EYU_control_normalized_signal_ce10.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE257570_ENCFF784CKU_optimal_IDR_thresholded_peaks_ce11.bigBed	123.3 Kb	(ftp)(http)	BIGBED
GSE257570_ENCFF959BWK_optimal_IDR_thresholded_peaks_ce10.bed.gz	42.9 Kb	(ftp)(http)	BED
GSE257570_RAW.tar	123.4 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA