NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE258101 Query DataSets for GSE258101
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR717JMX)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing FKH-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR717JMX/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 25, 2024
Last update date Sep 02, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL22765 Illumina HiSeq 4000 (Caenorhabditis elegans)
Samples (2)
GSM8109178 TF ChIP-seq from whole organism (ENCLB884AIU)
GSM8109179 TF ChIP-seq from whole organism (ENCLB055ZVZ)
Relations
Reanalyzed by GSE276166

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE258101_ENCFF017UFH_peaks_and_background_as_input_for_IDR_ce10.bed.gz 769.8 Kb (ftp)(http) BED
GSE258101_ENCFF071WAU_optimal_IDR_thresholded_peaks_ce11.bed.gz 8.8 Kb (ftp)(http) BED
GSE258101_ENCFF072CWW_signal_of_unique_reads_ce10.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE258101_ENCFF139YOY_optimal_IDR_thresholded_peaks_ce11.bigBed 52.7 Kb (ftp)(http) BIGBED
GSE258101_ENCFF258YAZ_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258101_ENCFF471PIJ_optimal_IDR_thresholded_peaks_ce10.bigBed 53.3 Kb (ftp)(http) BIGBED
GSE258101_ENCFF524UQA_signal_of_unique_reads_ce11.bigWig 9.5 Mb (ftp)(http) BIGWIG
GSE258101_ENCFF637DIA_optimal_IDR_thresholded_peaks_ce10.bed.gz 9.2 Kb (ftp)(http) BED
GSE258101_ENCFF669LKN_control_normalized_signal_ce10.bigWig 9.9 Mb (ftp)(http) BIGWIG
GSE258101_ENCFF742ZBE_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258101_ENCFF849WZQ_peaks_and_background_as_input_for_IDR_ce11.bed.gz 769.6 Kb (ftp)(http) BED
GSE258101_ENCFF914UID_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE258101_ENCFF915DEV_control_normalized_signal_ce11.bigWig 9.9 Mb (ftp)(http) BIGWIG
GSE258101_ENCFF989ABI_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE258101_RAW.tar 123.6 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap