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Series GSE258292

Query DataSets for GSE258292

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR626LGN)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq on transgenic worms expressing C38D4.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR626LGN/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL22765

Illumina HiSeq 4000 (Caenorhabditis elegans)

Samples (2)

GSM8109515	TF ChIP-seq from whole organism (ENCLB390RBM)
GSM8109516	TF ChIP-seq from whole organism (ENCLB889TSC)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE258292_ENCFF217RHN_optimal_IDR_thresholded_peaks_ce11.bed.gz	13.5 Kb	(ftp)(http)	BED
GSE258292_ENCFF351TKU_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE258292_ENCFF478POU_optimal_IDR_thresholded_peaks_ce11.bigBed	58.5 Kb	(ftp)(http)	BIGBED
GSE258292_ENCFF514HZU_control_normalized_signal_ce11.bigWig	9.8 Mb	(ftp)(http)	BIGWIG
GSE258292_ENCFF606STD_read-depth_normalized_signal_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE258292_ENCFF632ERW_peaks_and_background_as_input_for_IDR_ce11.bed.gz	772.4 Kb	(ftp)(http)	BED
GSE258292_ENCFF846XJJ_signal_of_unique_reads_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE258292_RAW.tar	61.6 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA