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Series GSE258406

Query DataSets for GSE258406

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR757OPC)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq of transgenic worms expressing VAB-15-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR757OPC/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 25, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL22765

Illumina HiSeq 4000 (Caenorhabditis elegans)

Samples (2)

GSM8109719	TF ChIP-seq from whole organism (ENCLB350ABJ)
GSM8109720	TF ChIP-seq from whole organism (ENCLB028PZX)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE258406_ENCFF052HDS_peaks_and_background_as_input_for_IDR_ce10.bed.gz	767.2 Kb	(ftp)(http)	BED
GSE258406_ENCFF085CJT_optimal_IDR_thresholded_peaks_ce11.bed.gz	22.4 Kb	(ftp)(http)	BED
GSE258406_ENCFF216NHW_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258406_ENCFF285IZV_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE258406_ENCFF371XKX_peaks_and_background_as_input_for_IDR_ce10.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE258406_ENCFF518JIS_optimal_IDR_thresholded_peaks_ce10.bigBed	85.3 Kb	(ftp)(http)	BIGBED
GSE258406_ENCFF574UDQ_control_normalized_signal_ce10.bigWig	9.9 Mb	(ftp)(http)	BIGWIG
GSE258406_ENCFF602ZRU_optimal_IDR_thresholded_peaks_ce10.bed.gz	23.0 Kb	(ftp)(http)	BED
GSE258406_ENCFF628XNQ_optimal_IDR_thresholded_peaks_ce11.bigBed	84.6 Kb	(ftp)(http)	BIGBED
GSE258406_ENCFF754KNN_signal_of_unique_reads_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258406_ENCFF795MNY_read-depth_normalized_signal_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258406_ENCFF920FWT_peaks_and_background_as_input_for_IDR_ce11.bed.gz	767.1 Kb	(ftp)(http)	BED
GSE258406_ENCFF962VLD_signal_of_unique_reads_ce10.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE258406_ENCFF969MUR_control_normalized_signal_ce11.bigWig	9.9 Mb	(ftp)(http)	BIGWIG
GSE258406_RAW.tar	123.8 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA