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Series GSE259148

Query DataSets for GSE259148

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR518WKG)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq on transgenic worms expressing pax-3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR518WKG/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 26, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL22765

Illumina HiSeq 4000 (Caenorhabditis elegans)

Samples (2)

GSM8111188	TF ChIP-seq from whole organism (ENCLB957AJD)
GSM8111189	TF ChIP-seq from whole organism (ENCLB975ZMY)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE259148_ENCFF332BED_control_normalized_signal_ce11.bigWig	9.9 Mb	(ftp)(http)	BIGWIG
GSE259148_ENCFF520FMK_signal_of_unique_reads_ce11.bigWig	9.5 Mb	(ftp)(http)	BIGWIG
GSE259148_ENCFF541JVZ_read-depth_normalized_signal_ce11.bigWig	9.6 Mb	(ftp)(http)	BIGWIG
GSE259148_ENCFF603FNA_optimal_IDR_thresholded_peaks_ce11.bed.gz	54.5 Kb	(ftp)(http)	BED
GSE259148_ENCFF607QIA_peaks_and_background_as_input_for_IDR_ce11.bigBed	1.2 Mb	(ftp)(http)	BIGBED
GSE259148_ENCFF713SRM_optimal_IDR_thresholded_peaks_ce11.bigBed	148.8 Kb	(ftp)(http)	BIGBED
GSE259148_ENCFF907FRP_peaks_and_background_as_input_for_IDR_ce11.bed.gz	763.7 Kb	(ftp)(http)	BED
GSE259148_RAW.tar	62.0 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA