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| Status |
Public on Oct 02, 2024 |
| Title |
Sheep Y-chromosome methylation profile from long reads sequencing data |
| Organism |
Ovis aries |
| Experiment type |
Methylation profiling by high throughput sequencing
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| Summary |
The methylation landscape of the sheep Y-chromosome was characterized using methylated cytosine data produced from PacBio and ONT long reads sequencing platforms. The study aimed to corroborate the presumptive locus of the sheep Y-chromosome centromere.
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| Overall design |
The annotation of the centromere was based on the identification of a characteristic centromeric dip in methylation signal associated with the locus of the kinetochore assembly.
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| Contributor(s) |
Olagunju TA, Rosen BD, Neibergs HL, Becker GM, Davenport KM, Elsik CG, Hadfield TS, Koren S, Kuhn KL, Rhie A, Shira KA, Skibiel AL, Stegemiller MR, Thorne JW, Villamediana P, Cockett NE, Murdoch BM, Smith TP |
| Citation(s) |
39333471 |
| BioProject |
PRJNA967002 |
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| Submission date |
Mar 29, 2024 |
| Last update date |
Oct 03, 2024 |
| Contact name |
Brenda Murdoch |
| Organization name |
University of Idaho
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| Department |
Department of Animal, Veterinary & Food Sciences
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| Lab |
Brenda Murdoch Lab
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| Street address |
875 Perimeter Dr.
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| City |
Moscow |
| State/province |
Idaho |
| ZIP/Postal code |
83843 |
| Country |
USA |
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| Platforms (2) |
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| Samples (2) |
| GSM8180206 |
Sheep Y-chromosome methylation profile from PacBio data |
| GSM8180207 |
Sheep Y-chromosome methylation profile from ONT data |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSE262831_RAW.tar |
17.3 Mb |
(http)(custom) |
TAR (of BED) |
SRA Run Selector |
| Raw data are available in SRA |
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