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Series GSE267201 Query DataSets for GSE267201
Status Public on Jun 25, 2024
Title The primitive endoderm supports lineage plasticity to enable regulative development [CUT&Tag H3K4me3]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Mammalian blastocyst formation involves the specification of trophectoderm followed by differentiation of the inner cell mass into embryonic epiblast and extra-embryonic primitive endoderm (PrE). During this time, the embryo maintains a window of plasticity and can redirect its cellular fate when challenged experimentally. In this context, we found that the PrE alone was sufficient to regenerate a complete blastocyst and continue postimplantation development. We identify an in vitro population similar to the early PrE in vivo that exhibits the same embryonic and extra-embryonic potency and can form complete stem cell-based embryo models termed blastoids. Commitment in the PrE is suppressed by JAK/STAT signalling, collaborating with OCT4 and the sustained expression of a subset of pluripotency-related transcription factors that safeguard an enhancer landscape permissive for multi-lineage differentiation. Our observations support the notion that transcription factor persistence underlies plasticity in regulative development and highlights the importance of the PrE in perturbed development.
 
Overall design Cleavage Under Targets & Tagmentation (CUT&Tag) of naïve extra-embryonic endoderm (nEnd) subpopulations
 
Contributor(s) Linneberg-Agerholm M, Redó-Riveiro A, Charlotte Sell A, Perera M, Proks M, Knudsen TE, Barral A, Manzanares M, Brickman JM
Citation(s) 38917790
Submission date May 10, 2024
Last update date Sep 24, 2024
Contact name Josh M Brickman
E-mail(s) joshua.brickman@sund.ku.dk
Organization name Copenhagen University
Department reNEW
Lab Brickman
Street address 3B Blegdamsvej
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (10)
GSM8262273 H3K4me3_DP_R1
GSM8262274 H3K4me3_DP_R2
GSM8262275 H3K4me3_DP_R3
Relations
BioProject PRJNA1110234

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE267201_H3K4me3_DP_consensus.bed.gz 74.0 Kb (ftp)(http) BED
GSE267201_H3K4me3_Oct4_consensus.bed.gz 71.8 Kb (ftp)(http) BED
GSE267201_H3K4me3_Pdgfra_consensus.bed.gz 70.8 Kb (ftp)(http) BED
GSE267201_RAW.tar 36.5 Mb (http)(custom) TAR (of BED, BW)
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Raw data are available in SRA

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