|
| Status |
Public on Oct 01, 2011 |
| Title |
Global gene expression of Ruegeria pomeroyi strain DSS3 in response to glucose, ammonium, phosphate, or sulfate limitation |
| Organism |
Ruegeria pomeroyi DSS-3 |
| Experiment type |
Expression profiling by array
|
| Summary |
We used the previously designed oligonucleotide-based microarray (Burgmann et al. Environmental Microbiology 2007, 9: 2742-2755) to detect the transcripts of R. pomeroyi DSS-3 genes when the cells were cultured under steady-state carbon (glucose), nitrogen (ammonium), phosphorus (phosphate), or sulfur (sulfate) limitation.
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| Overall design |
A total of 14 mRNA samples were hybridized to the arrays (three biological replicates from glucose, ammonium, phosphate, or sulfate limitation and one technical replicate each for ammonium or sulfate limitation)
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| Contributor(s) |
Moran MA, Chan L, Newton R, Sharma S |
| Citation |
Chan L-K, Newton RJ, Sharma S, Smith CB, Rayapati P, Limardo AJ, Meile C and Moran MA (2012) Transcriptional changes underlying elemental stoichiometry shifts in a marine heterotrophic bacterium. Frontiers in Microbiology. 3:159. doi: 10.3389/fmicb.2012.00159 http://www.frontiersin.org/Aquatic_Microbiology/10.3389/fmicb.2012.00159/abstract
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| Submission date |
Feb 02, 2011 |
| Last update date |
Jun 15, 2012 |
| Contact name |
Shalabh Sharma |
| E-mail(s) |
ssharmai@uga.edu
|
| Phone |
706-542-0341
|
| Organization name |
UGA
|
| Department |
Marine Science
|
| Lab |
Mary Ann Moran
|
| Street address |
Department of Marine Science
|
| City |
Athens |
| State/province |
GA |
| ZIP/Postal code |
30605 |
| Country |
USA |
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| Platforms (1) |
| GPL4067 |
UGAmamlab_Silicibacter_pomeroyi_DSS-3_8k_v1.0 |
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| Samples (14)
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| GSM665911 |
steady-state glucose limitation biological rep 1 of 3 |
| GSM665912 |
steady-state glucose limitation biological rep 2 of 3 |
| GSM665913 |
steady-state glucose limitation biological rep 3 of 3 |
| GSM665914 |
steady-state ammonium limitation tech rep 1 of 2 from the biological rep 1 of 3 |
| GSM665915 |
steady-state ammonium limitation tech rep 2 of 2 from the biological rep 1 of 3 |
| GSM665916 |
steady-state ammonium limitation biological rep 2 of 3 |
| GSM665917 |
steady-state ammonium limitation biological rep 3 of 3 |
| GSM665918 |
steady-state phosphate limitation biological rep 1 of 3 |
| GSM665919 |
steady-state phosphate limitation biological rep 2 of 3 |
| GSM665920 |
steady-state phosphate limitation biological rep 3 of 3 |
| GSM665921 |
steady-state sulfate limitation tech rep 1 of 2 from the biological rep 1 of 3 |
| GSM665922 |
steady-state sulfate limitation tech rep 2 of 2 from the biological rep 1 of 3 |
| GSM665923 |
steady-state sulfate limitation biological rep 2 of 3 |
| GSM665924 |
steady-state sulfate limitation biological rep 3 of 3 |
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| Relations |
| BioProject |
PRJNA137683 |
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