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| Status |
Public on Sep 13, 2012 |
| Title |
RNA-seq of Pacific oyster Crassostrea gigas under different developmental stages and stress treatments |
| Organism |
Magallana gigas |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Deep sequencing of samples from different development stages, different adult organs and different stress treatments of Pacific oyster Crassostrea gigas
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| Overall design |
Samples of 38 developmental stages from egg to juvenile were analyzed using single-end 49 bp RNA-seq. Two libraries mixed by RNAs from different developmental stages were analyzed using paired-end 90 bp RNA-seq. A total of 11 samples mainly from 8 organs (mantle, gill,adductor muscle, digestive gland, hemocyte, labial palp, female gonad and male gonad) were analyzed using paired-end 90 bp RNA-seq. At the same time, single-end 49 bp RNA-seq was conducted on 61 samples collected from adult oysters subjected to 9 types of environmental stressors (exposure to air, salinity, temperature, and exposure to metals).
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| Contributor(s) |
Zhang G, Fang X, Li L, Xu F, Wang X, Zhang L |
| Citation(s) |
22992520, 25514978 |
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| Submission date |
Jul 28, 2011 |
| Last update date |
Jun 12, 2019 |
| Contact name |
Fei Xu |
| E-mail(s) |
xufei@qdio.ac.cn
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| Phone |
+86-13791940813
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| Organization name |
Institute of Oceanology, Chinese Academy of Sciences
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| Street address |
7 Nanhai Road
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| City |
Qingdao |
| ZIP/Postal code |
266071 |
| Country |
China |
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| Platforms (1) |
| GPL13986 |
Illumina HiSeq 2000 (Crassostrea gigas) |
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| Samples (112)
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| Relations |
| BioProject |
PRJNA146329 |
| SRA |
SRP014559 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE31012_RAW.tar |
6.5 Gb |
(http)(custom) |
TAR (of BEDGRAPH) |
SRA Run Selector |
| Raw data are available in SRA |
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