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Series GSE33314 Query DataSets for GSE33314
Status Public on Feb 29, 2012
Title Gene expression analysis of bovine blastocyst produced under alternative in vivo and in vitro culture conditions during EGA time
Organism Bos taurus
Experiment type Expression profiling by array
Summary There is an inevitable need for combining in vitro and in vivo culture systems during specific developmental time points to facilitate a comprehensive understanding of early embryo development which would yield insights into the molecular pathways controlling early development and to improve our knowledge in regulation of embryonic development. In current study, we aimed to understand the influences of alternative culture conditions (in vivo or in vitro) during EGA event on embryonic developmental rate, gene expression pattern and subsequent influences on pathways and biological functions controlling bovine embryo development.
 
Overall design Six different blastocyst groups were produced under alternative in vivo and in vitro culture conditions. The first two groups (Vitro_4-cell and Vitro_16-cell) were matured, fertilized and cultured in vitro until 4- and 16-cell stage, respectively then transferred to synchronized recipients and continued culture in vivo until day 7 blastocyst stage. The second two groups (Vivo_4-cell and Vivo_16-cell) were matured, fertilized and cultured in vivo until 4- and 16-cell stage, respectively then flushed out and cultured in vitro until day 7 blastocyst stage. Complete in vitro (IVP) and in vivo (control group) blastocysts were also produced. Samples from the three pools (biological replicates) of each blastocyst group and in vivo control blastocyst were hybridized on EmbryoGENE’s bovine microarray using a dye-swap design (technical replicates) for a total of six arrays.
 
Citation(s) 22811576
Submission date Oct 28, 2011
Last update date Nov 06, 2012
Contact name Ahmed Gad
E-mail(s) ahmed.y.gad@agr.cu.edu.eg
Organization name Colorado State University
Department Biomedical Sciences
Lab ARBL
Street address 3107 Rampart Rd
City Fort Collins
State/province Colorado
ZIP/Postal code 80521
Country USA
 
Platforms (1)
GPL13226 Agilent-028298 Embryogene Bovine 45K microarray
Samples (30)
GSM823814 Array 1_vitro_4-cell rep1
GSM823815 Array 2_vitro_4-cell rep1
GSM823816 Array 3_vitro_4-cell rep2
Relations
BioProject PRJNA149297

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE33314_RAW.tar 335.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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