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Series GSE39480 Query DataSets for GSE39480
Status Public on Feb 07, 2013
Title The mouse cytosine-5 RNA methyltransferase NSun2 is a component of the chromatoid body and required for testis differentiation
Organism Mus musculus
Experiment type Expression profiling by array
Summary Post-transcriptional regulatory mechanisms are crucial for protein synthesis during spermatogenesis and often organized by the chromatoid body. Chromatoid bodies are large cytoplasmic ribonucleoprotein granules, whose precise function and composition remain unclear. Here, we identify NSun2 as a novel component of the chromatoid body, and further show that this RNA methylase is essential for germ cell differentiation in the mouse testis. Lack of NSun2 leads to down-regulation of genes controlling RNA processing and post-transcriptional repression pathways, including Ddx4, Mili, Piwil1 (Miwi) and Tudor domain containing (Tdrd) proteins. Germ cell differentiation was blocked specifically at the pachytene stage by lack of NSun2, as spermatogonial and Sertoli cells were unaffected in knockout mice. We observed the same phenotype when we simultaneously deleted NSun2 with Dnmt2, the only other characterized cytosine-5 RNA methyltransferase to date, indicating that Dnmt2 was not functionally redundant for NSun2 in spermatogonial stem cells or Sertoli cells. Thus, our data indicate that RNA methylation pathways play an essential role in male germ cell differentiation.
 
Overall design Four sample groups: Testes from Wild-type and NSun2 knock out mice at 15 and 49 days; 6 samples in each group
 
Contributor(s) Hussain S, Frye M, Menon S
Citation(s) 23401851
Submission date Jul 18, 2012
Last update date Jan 16, 2019
Contact name Suraj Menon
E-mail(s) suraj.menon@cruk.cam.ac.uk
Organization name Cambridge Research Institute, Cancer Research UK
Street address Li Ka Shing Center, Robinson Way
City Cambridge
ZIP/Postal code CB2 0RE
Country United Kingdom
 
Platforms (1)
GPL6887 Illumina MouseWG-6 v2.0 expression beadchip
Samples (24)
GSM969896 5922012047_A
GSM969897 5922012047_B
GSM969898 5922012047_C
Relations
BioProject PRJNA170955

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE39480_RAW.tar 15.8 Mb (http)(custom) TAR
GSE39480_non-normalized.txt.gz 6.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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