|
| Status |
Public on Sep 07, 2012 |
| Title |
RNA-Seq of control and ELL2-depleted MPC11 plasmacytoma cell lines |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We report RNA-Seq data from MPC11 plasmacytoma cell lines transduced with either control hairpins (shGFP) or hairpins targeting the transcriptional elongation factor ELL2. ELL2 has been identified as regulating the alternative splicing and polyadenylation of immunoglobulin pre-mRNA, and is highly expressed by plasma cells but not other B cells. Notably, ELL2 drives the accumulation of transcripts encoding secreted immunoglobulin at the expense of membrane-associated transcripts. This study sought to examine the impact of ELL2 on mRNA processing at the transcriptome level, and found that ELL2 controls the alternative processing of 12% of annotated transcripts in MPC11 cells.
|
| |
|
| Overall design |
Examination of pre-mRNA splicing patterns in either control or ELL2-depleted cells
|
| |
|
| Contributor(s) |
Benson MJ, Rao A |
| Citation(s) |
22991471 |
| |
| Submission date |
Aug 22, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Tarmo Äijö |
| Organization name |
Flatiron Institute
|
| Department |
Center for Computational Biology
|
| Street address |
162 5th Avenue
|
| City |
New York |
| ZIP/Postal code |
10010 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL14602 |
AB SOLiD 4 System (Mus musculus) |
|
| Samples (4)
|
|
| Relations |
| BioProject |
PRJNA173418 |
| SRA |
SRP015002 |
Less...
More...