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Series GSE49827 Query DataSets for GSE49827
Status Public on Dec 17, 2013
Title Transformation of the Fallopian Tube Secretory Epithelium Leads to High-grade Serous Ovarian Cancer in BRCA/P53/PTEN Models
Organism Mus musculus
Experiment type Genome variation profiling by genome tiling array
Summary Our study presents the first genetic models of de novo high-grade serous carcinomas (HGSC) that originate in fallopian tube secretory epithelial cells and recapitulate the key genetic alterations and precursor lesions characteristic of human invasive ovarian cancer. Genomic copy number analysis, using array CGH, was performed on murine tumors in order to compare the overlap of copy number alterations between HGSC models and TCGA data.
 
Overall design Array CGH was performed on genomic DNA isolated from murine HGSC tumors. Genomic DNA from three normal mouse fallopian tubes was pooled and used as the reference.
 
Contributor(s) Setlur SR, Dinulescu D, Drapkin R
Citation(s) 24332043
Submission date Aug 13, 2013
Last update date Dec 19, 2013
Contact name Sunita R Setlur
E-mail(s) ssetlur@partners.org
Organization name Brigham and Women's Hospital
Street address 221 Longwood Avenue
City Boston
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL10448 Agilent-027414 SurePrint G3 Mouse CGH Microarray 1x1M
Samples (3)
GSM1207783 Murine HGSC, T5117
GSM1207784 Murine HGSC, T6096
GSM1207785 Murine HGSC, T5433
Relations
BioProject PRJNA215028

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49827_RAW.tar 299.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data provided as supplementary file

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