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Series GSE5458

Query DataSets for GSE5458

Status

Public on May 02, 2007

Title

Role of DNA Topoisomerase IIbeta in Gene Expression

Organism

Mus musculus

Experiment type

Expression profiling by array

Summary

Mice lacking topoisomerase IIβ (Top IIβ) are known to exhibit a perinatal death phenotype. In the current study, transcription profiles of the brains of wild type and top2β knockout mouse embryos were generated. Surprisingly, only a small number (1-4%) of genes were affected in top2β knockout embryos. However, the expression of nearly 30% of developmentally regulated genes was either up- or down-regulated.
By contrast, the expression of genes encoding general cell growth functions and early differentiation markers was not affected, suggesting that TopIIβ is not required for early differentiation programming, but is specifically required for the expression of developmentally regulated genes at later stages of differentiation. Consistent with this notion, immunohistochemical analysis of brain sections showed that TopIIβ and HDAC2, a known TopIIβ-interacting protein, were preferentially expressed in neurons which are in their later stages of differentiation. Chromatin immunoprecipitation analysis of the developing brains revealed TopIIβ binding to the 5’ region of a number of TopIIβ-sensitive genes. Further
studies of a TopIIβ-sensitive gene, Kcnd2, revealed the presence of TopIIβ in the transcription unit with major binding near the promoter region. Together, these results support a role of TopIIβ in activation/repression of developmentally regulated genes at late stages of neuronal differentiation.
Keywords: Gene expression in genetically modified mouse strain, top2b-/-.

Overall design

Total RNAs were isolated from the brains of E14.5, E16.5 and E18.5 Top2b+/+ and top2b-/- embryos. Corresponding biotin-labeled cRNAs were then hybridized to Affymetrix GeneChip MG_U74Av2 microarrays. Data were then uploaded and analyzed by the Rosetta Resolver® system for gene expression data analysis (Rosetta Inpharmatics®, Inc.)

Contributor(s)

Lyu Y, Wang JC, Liu LF

Citation(s)

16923961

Submission date

Aug 04, 2006

Last update date

Feb 18, 2018

Contact name

Yi Lisa Lyu

Organization name

UMDNJ-Robert Wood Johnson Medical School