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| Status |
Public on Jul 17, 2015 |
| Title |
H3K36 methylation promotes longevity by enhancing transcriptional fidelity [ChIP-Seq] |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
Epigenetic mechanisms including histone post-translational modifications control longevity in diverse organisms. Relatedly, loss of proper transcriptional regulation on a global scale is an emerging aspect of shortened lifespan, but the specific mechanisms linking these observations remain to be uncovered. Here, we describe a lifespan screen in S. cerevisiae, designed to identify altered amino acid residues of histones that alter yeast replicative aging. Our results reveal that lack of sustained H3K36 methylation is commensurate with increased cryptic transcription in a set of genes in old cells and shorter lifespan. Deletion of the K36me2/3 demethylase Rph1 increases H3K36me3 within these genes and suppresses cryptic transcript initiation to extend lifespan. We show that this aging phenomenon is conserved, as cryptic transcription also increases in old worms. We propose that epigenetic misregulation in aging cells leads to an increase in transcriptional noise that is detrimental to lifespan, and, importantly, this acceleration in aging can be reversed by restoring transcriptional fidelity.
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| Overall design |
This study examines H3K36me3 in yeast aging using a WT or Rph1 mutant background over a sequence of time-dependent FACS sorts of old cells. There are three sorts: S2Y (young yeast), S2O or S3O (both old yeast). The study has two replicates, F1 and F2. F2 is the combination of two flowcells of sequenced tags. For each sample, we sequenced H3K36me3, H3, and input, and we use H3 as a sonication efficiency normalization in the associated study.
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| Contributor(s) |
Sen P, Dang W, Donahue G, Dai J, Dorsey J, Cao X, Liu W, Cao K, Perry R, Lee JY, Wagner J, Gregory BD, Wasko BM, Carr DT, Kaeberlein M, Kennedy BK, Boeke J, Berger SL |
| Citation(s) |
26159996 |
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| Submission date |
Feb 09, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Gregory Donahue |
| Organization name |
The University of Pennsylvania
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| Department |
Cell & Developmental Biology
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| Lab |
Zaret Lab
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| Street address |
3400 Civic Center Blvd, Bldg 421
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| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
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| Platforms (2) |
| GPL13821 |
Illumina HiSeq 2000 (Saccharomyces cerevisiae) |
| GPL19756 |
Illumina NextSeq 500 (Saccharomyces cerevisiae) |
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| Samples (36)
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| GSM1604429 |
WT Young (S2Y, Exp 1) H3 |
| GSM1604430 |
WT Old (S2O, Exp 1) H3 |
| GSM1604431 |
WT Old (S3O, Exp 1) H3 |
| GSM1604432 |
WT Young (S2Y, Exp 1) Input |
| GSM1604433 |
WT Old (S2O, Exp 1) Input |
| GSM1604434 |
WT Old (S3O, Exp 1) Input |
| GSM1604435 |
Rph1- Young (S2Y, Exp 1) H3K36me3 |
| GSM1604436 |
Rph1- Old (S2O, Exp 1) H3K36me3 |
| GSM1604437 |
Rph1- Old (S3O, Exp 1) H3K36me3 |
| GSM1604438 |
Rph1- Young (S2Y, Exp 1) H3 |
| GSM1604439 |
Rph1- Old (S2O, Exp 1) H3 |
| GSM1604440 |
Rph1- Old (S3O, Exp 1) H3 |
| GSM1604441 |
Rph1- Young (S2Y, Exp 1) Input |
| GSM1604442 |
Rph1- Old (S2O, Exp 1) Input |
| GSM1604443 |
Rph1- Old (S3O, Exp 1) Input |
| GSM1604444 |
WT Young (S2Y, Exp 2) H3K36me3 |
| GSM1604445 |
WT Old (S2O, Exp 2) H3K36me3 |
| GSM1604446 |
WT Old (S3O, Exp 2) H3K36me3 |
| GSM1604447 |
WT Young (S2Y, Exp 2) H3 |
| GSM1604448 |
WT Old (S2O, Exp 2) H3 |
| GSM1604449 |
WT Old (S3O, Exp 2) H3 |
| GSM1604450 |
WT Young (S2Y, Exp 2) Input |
| GSM1604451 |
WT Old (S2O, Exp 2) Input |
| GSM1604452 |
WT Old (S3O, Exp 2) Input |
| GSM1604453 |
Rph1- Young (S2Y, Exp 2) H3K36me3 |
| GSM1604454 |
Rph1- Old (S2O, Exp 2) H3K36me3 |
| GSM1604455 |
Rph1- Old (S3O, Exp 2) H3K36me3 |
| GSM1604456 |
Rph1- Young (S2Y, Exp 2) H3 |
| GSM1604457 |
Rph1- Old (S2O, Exp 2) H3 |
| GSM1604458 |
Rph1- Old (S3O, Exp 2) H3 |
| GSM1604459 |
Rph1- Young (S2Y, Exp 2) Input |
| GSM1604460 |
Rph1- Old (S2O, Exp 2) Input |
| GSM1604461 |
Rph1- Old (S3O, Exp 2) Input |
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| This SubSeries is part of SuperSeries: |
| GSE65767 |
H3K36 methylation promotes longevity by enhancing transcriptional fidelity |
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| Relations |
| BioProject |
PRJNA274975 |
| SRA |
SRP053374 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE65766_H3K36me3-H3.Rph1.S2O.bw |
64.5 Mb |
(ftp)(http) |
BW |
| GSE65766_H3K36me3-H3.Rph1.S2Y.bw |
74.7 Mb |
(ftp)(http) |
BW |
| GSE65766_H3K36me3-H3.Rph1.S3O.bw |
40.2 Mb |
(ftp)(http) |
BW |
| GSE65766_H3K36me3-H3.WT.S2O.bw |
76.8 Mb |
(ftp)(http) |
BW |
| GSE65766_H3K36me3-H3.WT.S2Y.bw |
83.4 Mb |
(ftp)(http) |
BW |
| GSE65766_H3K36me3-H3.WT.S3O.bw |
75.2 Mb |
(ftp)(http) |
BW |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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