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Status |
Public on Jun 30, 2016 |
Title |
Human and mouse DRIP-seq and DRIPc-seq |
Organisms |
Homo sapiens; Mus musculus |
Experiment type |
Other Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing
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Summary |
This study profiles RNA:DNA hybrid formation in human and mouse cell lines.
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Overall design |
DRIPc-seq (strand-specific R-loop mapping) was performed on human NT2 cells and mouse 3T3 cells. DRIP-seq (R-loop mapping) was performed on human NT2 and K562 and mouse E14 and 3T3 cell lines. MethylC-seq and RNA-seq were performed on NT2.
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Contributor(s) |
Sanz LA, Lim Y, Hartono SR, Rajpurkar AR, Chedin F |
Citation(s) |
27373332, 31053798 |
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Submission date |
Jun 23, 2015 |
Last update date |
May 15, 2019 |
Contact name |
Yoong Wearn Lim |
E-mail(s) |
ywlim@ucdavis.edu
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Organization name |
University of California, Davis
|
Department |
Molecular and Cellular Biology
|
Lab |
Chedin
|
Street address |
One Shields Avenue
|
City |
Davis |
State/province |
CA |
ZIP/Postal code |
95616 |
Country |
USA |
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Platforms (3) |
GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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Samples (13)
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Relations |
BioProject |
PRJNA287823 |
SRA |
SRP059800 |