|
| Status |
Public on May 01, 2016 |
| Title |
Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection [smallRNA-Seq] |
| Organism |
Oryza sativa Indica Group |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Rice blast is a recurrent fungal disease, and resistance to fungal infection is a complex trait. Therefore, a comprehensive examination of rice transcriptome and its variation during fungal infection is necessary to understand the complex gene regulatory networks. In this study, adopting Next-Generation Sequencing we profiled the transcriptomes and microRNAomes of rice varieties, one susceptible and the other resistant to M. oryzae, at multiple time points during the fungal infection.
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| |
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| Overall design |
In order to investigate variations of rice transcriptome and microRNAome in response to blast infection, we sequenced, profiled, compared and analyzed the gene expressions of two rice cultivars, one susceptible (CO39) and the other resistant (C101LAC) to M. oryzae, at different time points after M. oryzae infection (Fig. 1).
|
| Web link |
http://www.nature.com/articles/srep25493
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| |
|
| Contributor(s) |
Li Z, Wang C, Zhang W, Chen Y |
| Citation(s) |
27150822 |
| |
| Submission date |
Jan 28, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Haifan Lin |
| E-mail(s) |
haifan.lin@yale.edu
|
| Organization name |
Yale Univeristy
|
| Department |
Cell Biology
|
| Lab |
Stem cell center
|
| Street address |
10 Amistad St.
|
| City |
New Haven |
| State/province |
Connecticut |
| ZIP/Postal code |
06520 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL14553 |
Illumina HiSeq 2000 (Oryza sativa Indica Group) |
|
| Samples (10)
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| This SubSeries is part of SuperSeries: |
| GSE77333 |
Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection |
|
| Relations |
| BioProject |
PRJNA310070 |
| SRA |
SRP068994 |
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