|
| Status |
Public on Aug 30, 2016 |
| Title |
Gene expression profiling shows that combination of jazQ and phyB-9 mutations promotes additive and enhanced expression of growth- and defense-related genes |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The quintuple jaz mutant jazQ and the phytochrome mutant phyB-9 affect plant growth and defense. We used RNA-sequencing to query the transcriptomes of jazQ and phyB-9, as well as the combined jazQ phyB-9 sextuple mutatant, and examined how these mutations alter the expression of growth- and defense-associated genes. The data highlight how jasmonate and light signaling pathways contribute to growth and defense, and how their removal genetically promotes additive responses.
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| |
|
| Overall design |
Analysis of Col-0 (wildtype), jazQ, phyB-9, and jazQ phyB-9 (four genotypes), with three biological replicates per genotype - 12 total samples.
|
| Web link |
http://www.nature.com/articles/ncomms12570
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| |
|
| Contributor(s) |
Marcelo CL, Howe GA |
| Citation(s) |
27573094 |
| |
| Submission date |
Mar 08, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Gregg A Howe |
| E-mail(s) |
howeg@msu.edu
|
| Organization name |
Michigan State University
|
| Department |
Plant Research Laboratory
|
| Street address |
612 Wilson Rd
|
| City |
East Lansing |
| State/province |
MI |
| ZIP/Postal code |
48824 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA314692 |
| SRA |
SRP071310 |
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