|
| Status |
Public on Sep 07, 2017 |
| Title |
ENAP1 is involoved in the Histone H3K23 acetylation- and EIN3- mediated ethylene response |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We report that ethylene reduce the ENAP1 binding. We perform Chip-sequencing of ENAP1 using chromatins isolated from 3-day old etiolated Col-0/ein2/ein3eil1 seedlings treated with ethylene or air gas. Results show that ethylene reduce ENAP1 binding in TSS region of EIN3 targeted genes that are regulated at the transcriptional level by ethylene.
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| |
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| Overall design |
Examination of 1 different protein binding in 3 Arabidopsis lines which under 2 different treatment.
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| |
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| Contributor(s) |
Qiao H, Wang L, Zhang F |
| Citation(s) |
28874528 |
| |
| Submission date |
May 06, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Hong Qiao |
| Organization name |
The University of Texas at Austin
|
| Department |
Department of Molecular Biosciences
|
| Lab |
Qiao lab
|
| Street address |
2506 speedway, NMS5.324
|
| City |
Austin |
| State/province |
TEXAS |
| ZIP/Postal code |
78731 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (16)
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|
| Relations |
| BioProject |
PRJNA321020 |
| SRA |
SRP074584 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE81200_30_34vsC1_C5_control_lambda.bedGraph.gz |
185.8 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_30_34vsC1_C5_treat_pileup.bedGraph.gz |
92.1 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_38_42vsC9_C13_control_lambda.bedGraph.gz |
116.8 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_38_42vsC9_C13_treat_pileup.bedGraph.gz |
124.2 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_50_46vsC17_C21_control_lambda.bedGraph.gz |
110.3 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_50_46vsC17_C21_treat_pileup.bedGraph.gz |
42.9 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_C16_C12vsC11_C15_control_lambda.bedGraph.gz |
173.6 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_C16_C12vsC11_C15_treat_pileup.bedGraph.gz |
199.7 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_C24_C20vsC19_C23_control_lambda.bedGraph.gz |
158.2 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_C24_C20vsC19_C23_treat_pileup.bedGraph.gz |
195.1 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_C8_C4vsC3_C7_control_lambda.bedGraph.gz |
181.4 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_C8_C4vsC3_C7_treat_pileup.bedGraph.gz |
94.3 Mb |
(ftp)(http) |
BEDGRAPH |
| GSE81200_macs2.optimal.30_34vsC1_C5.narrowPeak.gz |
188.0 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE81200_macs2.optimal.38_42vsC9_C13.narrowPeak.gz |
79.5 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE81200_macs2.optimal.50_46vsC17_C21.narrowPeak.gz |
103.1 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE81200_macs2.optimal.C16_C12vsC11_C15.narrowPeak.gz |
111.4 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE81200_macs2.optimal.C24_C20vsC19_C23.narrowPeak.gz |
79.7 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE81200_macs2.optimal.C8_C4vsC3_C7.narrowPeak.gz |
118.1 Kb |
(ftp)(http) |
NARROWPEAK |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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