|
| Status |
Public on Jul 17, 2016 |
| Title |
Expansion of GA dinucleotide repeats increases the density of CLAMP binding sites on the X-chromosome to promote Drosophila dosage compensation [ChIP-Seq] |
| Organisms |
Drosophila melanogaster; Drosophila miranda |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
ChIP-seq was performed to compare binding the genome-wide binding profile of the CLAMP transcription factor in two different Drosophila species.
|
| |
|
| Overall design |
ChIP seq experiments compare the binding profile of CLAMP in female larvae to identify conservation of its binding sequence.
|
| |
|
| Contributor(s) |
Larschan E |
| Citation(s) |
27414415 |
| |
| Submission date |
Jun 16, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Michael Tolstorukov |
| E-mail(s) |
tolstorukov@molbio.mgh.harvard.edu
|
| Organization name |
Massachusetts General Hospital
|
| Department |
Molecular Biology
|
| Street address |
185 Cambridge Street
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02114 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL17275 |
Illumina HiSeq 2500 (Drosophila melanogaster) |
| GPL22022 |
Illumina HiSeq 2500 (Drosophila miranda) |
|
| Samples (8)
|
| GSM2203000 |
Female Melanogaster CLAMP input Replicate 1 |
| GSM2203001 |
Female Melanogaster CLAMP ChIPseq Replicate 1 |
| GSM2203002 |
Female Melanogaster CLAMP input Replicate 2 |
| GSM2203003 |
Female Melanogaster CLAMP ChIPseq Replicate 2 |
| GSM2203004 |
Female Miranda CLAMP input Replicate 1 |
| GSM2203005 |
Female Miranda CLAMP ChIPseq Replicate 1 |
| GSM2203006 |
Female Miranda CLAMP input Replicate 2 |
| GSM2203007 |
Female Miranda CLAMP ChIPseq Replicate 2 |
|
| This SubSeries is part of SuperSeries: |
| GSE83444 |
Expansion of GA dinucleotide repeats increases the density of CLAMP binding sites on the X-chromosome to promote Drosophila dosage compensation |
|
| Relations |
| BioProject |
PRJNA325925 |
| SRA |
SRP076672 |
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