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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 04, 2017 |
| Title |
Interaction dynamics determine signaling and output pathway responses |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Study of the response to the osmotic shock and its effect on gene expression regulation in different strains of Saccharomyces cerevisiae (WT and Sln1/Ypd1 mutants). The cells received a sodium chloride stimulation (NaCl 0.4M), and were sampled at the time of stimulation (0 min) and in 10 and 20 minutes after the stimulation.
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| Overall design |
24 Samples
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| Contributor(s) |
Stojanovski K, Ferrar T, Benisty H, Uschner F, Delgado J, Jimenez J, Solé C, de Nadal E, Klipp E, Posas F, Serrano L, Kiel C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Feb 03, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Christina Kiel |
| E-mail(s) |
christina.kiel@ucd.ie
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| Organization name |
CRG
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| Department |
Systems Biology
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| Street address |
Dr Aiguader 88
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| City |
Barcelona |
| ZIP/Postal code |
08001 |
| Country |
Spain |
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| Platforms (1) |
| GPL13821 |
Illumina HiSeq 2000 (Saccharomyces cerevisiae) |
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| Samples (24)
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| GSM2476838 |
Mutated strain 1, t0, replicate 2 |
| GSM2476839 |
Mutated strain 2, t0, replicate 1 |
| GSM2476840 |
Mutated strain 2, t0, replicate 2 |
| GSM2476841 |
Mutated strain 3, t0, replicate 1 |
| GSM2476842 |
Mutated strain 3, t0, replicate 2 |
| GSM2476843 |
wild type strain, t10, replicate 1 |
| GSM2476844 |
wild type strain, t10, replicate 2 |
| GSM2476845 |
Mutated strain 1, t10, replicate 1 |
| GSM2476846 |
Mutated strain 1, t10, replicate 2 |
| GSM2476847 |
Mutated strain 2, t10, replicate 1 |
| GSM2476848 |
Mutated strain 2, t10, replicate 2 |
| GSM2476849 |
Mutated strain 3, t10, replicate 1 |
| GSM2476850 |
Mutated strain 3, t10, replicate 2 |
| GSM2476851 |
wild type strain, t20, replicate 1 |
| GSM2476852 |
wild type strain, t20, replicate 2 |
| GSM2476853 |
Mutated strain 1, t20, replicate 1 |
| GSM2476854 |
Mutated strain 1, t20, replicate 2 |
| GSM2476855 |
Mutated strain 2, t20, replicate 1 |
| GSM2476856 |
Mutated strain 2, t20, replicate 2 |
| GSM2476857 |
Mutated strain 3, t20, replicate 1 |
| GSM2476858 |
Mutated strain 3, t20, replicate 2 |
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| Relations |
| BioProject |
PRJNA369866 |
| SRA |
SRP098827 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE94495_fpkm_allsamples.txt.gz |
579.8 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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