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GEO accession:
Series GSE97794
Query DataSets for GSE97794
Status
Public on Apr 03, 2018
Title
Divergence in DNA specificity among paralogous transcription factors contributes to their differential in vivo binding
Platform organisms
Homo sapiens
;
synthetic construct
Sample organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
29605182
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
R01 GM117106
New methods for quantitative modeling of protein-DNA interactions
DUKE UNIVERSITY
Raluca Gordan
Submission date
Apr 14, 2017
Last update date
Jul 25, 2021
Contact name
Raluca Gordan
E-mail(s)
raluca.gordan@duke.edu
Organization name
Duke University
Department
Center for Genomic and Computational Biology
Street address
101 Science Dr, CIEMAS 2179
City
Durham
State/province
NC
ZIP/Postal code
27708
Country
USA
Platforms (5)
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GPL17173
Duke/RG_MycMaxMad_v1
GPL19244
Duke/RG_E2F1-3-4_cust2_v1
GPL23293
Duke/RG_Runx1Runx2_v1 (Agilent 4x180k)
GPL23305
Duke/RG_Elk1Ets1Gabpa_v1 (Agilent 4x180k)
GPL23935
Universal PBM 4x44k (Bulyk lab design)
Samples (28)
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GSM2575567
Runx1 at 10 nM concentration
GSM2575568
Runx1 at 50 nM concentration
GSM2575569
Runx2 at 10 nM concentration
GSM2575570
Runx2 at 50 nM concentration
GSM2577527
Elk1 at 100 nM concentration
GSM2577528
Elk1 at 50 nM concentration
GSM2577529
Ets1 at 100 nM concentration
GSM2577530
Gabpa at 100 nM concentration
GSM2579594
Mad1 at 1 uM concentration and Max at 100 nM concentration
GSM2579595
Mad1 at 1 uM concentration and Max at 100 nM concentration (replicate)
GSM2579596
Max at 100 nM concentration
GSM2579597
c-Myc at 1 uM concentration and Max at 100 nM concentration
GSM2579598
E2F1 at 200 nM concentration
GSM2579599
E2F1 at 250 nM concentration
GSM2579600
E2F3 at 250 nM concentration
GSM2579601
E2F4 at 500 nM concentration
GSM2579602
E2F4 at 800 nM concentration
GSM2746659
Mad1 at 1 uM concentration and Max at 100 nM concentration [Universal PBM 4x44k]
GSM2746660
Max at 100 nM concentration [Universal PBM 4x44k]
GSM2746661
c-Myc at 1 uM concentration and Max at 100 nM concentration [Universal PBM 4x44k]
GSM3291578
Elk1 at 200 nM concentration
GSM3291579
Ets1 at 70 nM concentration
GSM3291580
Gabpa at 50 nM concentration
GSM3291581
E2f1 at 200 nM concentration
GSM3291582
E2f3 at 200 nM concentration
GSM3291583
E2f4 at 200 nM concentration
GSM3293889
Runx1 at 200 nM concentration
GSM3293890
Runx2 at 200 nM concentration
This SuperSeries is composed of the following SubSeries:
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GSE97691
Divergence in DNA specificity among paralogous transcription factors contributes to their differential in vivo binding [RG_Runx1Runx2_v1]
GSE97793
Divergence in DNA specificity among paralogous transcription factors contributes to their differential in vivo binding [RG_Elk1Ets1Gabpa_v1]
GSE97885
Divergence in DNA specificity among paralogous transcription factors contributes to their differential in vivo binding [RG_MycMaxMad_v1]
GSE97886
Divergence in DNA specificity among paralogous transcription factors contributes to their differential in vivo binding [RG_E2F1-3-4_cust2_v1]
GSE102810
Divergence in DNA specificity among paralogous transcription factors contributes to their differential in vivo binding [uPBM_Elk1Ets1Gabpa_MycMaxMad]
GSE117348
Divergence in DNA specificity among paralogous transcription factors contributes to their differential in vivo binding [uPBM_Elk1Ets1Gabpa]
GSE117349
Divergence in DNA specificity among paralogous transcription factors contributes to their differential in vivo binding [uPBM_E2f1E2f3E2f]
GSE117350
Divergence in DNA specificity among paralogous transcription factors contributes to their differential in vivo binding [uPBM_Runx1Runx2]
Relations
BioProject
PRJNA382894
Download family
Format
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TXT
Supplementary file
Size
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File type/resource
GSE97794_RAW.tar
143.4 Mb
(http)
(custom)
TAR (of TXT)
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