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Sample GSM1001 Query DataSets for GSM1001
Status Public on Feb 12, 2002
Title YP ethanol vs reference pool
Sample type RNA
 
Channel 1
Source name pool
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name ethanol
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12n116
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 11 10 5 9 1 8 8 12 2 14 .522 0 -1.322 .524 33 27 5 2.5 .2 .4 .262 1119 177 54 69 75 90 -1.322
2 11 10 6 11 4 9 7 11 6 17 .565 0 0 .773 37 46 1.5 1 .667 1 .358 896 177 54 69 92 107 0
3 11 10 3 10 3 9 7 11 4 15 .784 0 .415 .804 23 31 1 .75 1 1.333 .513 896 177 54 69 110 125 .415
4 10 10 7 12 4 8 8 12 6 18 .725 0 -.222 .908 42 32 1.75 1.167 .571 .857 .524 906 177 54 69 127 142 -.222
5 10 9 37 31 23 9 8 12 36 48 .741 0 -.04 .595 76 73 1.609 1.028 .622 .973 .518 909 177 54 69 145 160 -.04
6 11 10 6 13 5 9 8 12 8 20 .746 0 .415 .857 42 39 1.2 .75 .833 1.333 .634 896 177 54 69 163 178 .415
7 10 9 1 9 1 9 8 12 2 14 .06 0 1 .75 25 24 1 .5 1 2 .047 906 177 54 69 180 195 1
8 9 9 1 8 9 8 12 12 .017 0 .8 28 22 .016 909 177 54 69 198 213
9 10 9 1 8 9 8 12 12 .07 0 .75 35 17 .05 896 177 54 69 216 231
10 11 10 9 10 9 14 14 -.046 0 1 18 23 -.038 915 177 54 69 233 248
11 11 10 8 10 9 14 12 .063 0 .75 24 14 .045 919 177 54 69 251 266
12 13 10 2 9 16 9 14 14 .307 0 .5 27 24 .23 928 177 54 69 268 283
13 14 9 1 9 17 9 14 14 -.123 0 .667 29 24 -.094 941 177 54 69 286 301
14 10 8 7 10 8 12 11 .089 0 .875 25 18 .067 928 177 54 69 304 319
15 10 8 1 8 11 8 12 12 -.02 0 1 30 25 -.017 937 177 54 69 321 336
16 10 8 8 11 8 12 12 .103 0 .667 23 20 .078 941 177 54 69 339 354
17 9 7 1 7 10 7 11 11 -.094 0 .625 32 22 -.069 928 177 54 69 357 372
18 8 7 7 9 7 11 11 .02 0 1.5 22 25 .021 937 177 54 69 374 389
19 10 8 1 8 1 9 7 11 1 12 .097 0 0 1 25 32 1 1 1 1 .085 928 177 54 69 392 407 0
20 10 8 6 9 2 10 7 11 3 14 .61 0 -1 .5 47 37 3 2 .333 .5 .269 928 177 54 69 409 424 -1

Total number of rows: 9216

Table truncated, full table size 963 Kbytes.




Supplementary data files not provided
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