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GEO accession:
Sample GSM100889
Query DataSets for GSM100889
Status
Public on May 26, 2006
Title
Acromegaly case A6
Sample type
RNA
Source name
blood
Organism
Homo sapiens
Characteristics
peripheral blood
Extracted molecule
total RNA
Extraction protocol
Total RNA extracted from whole blood with PAXgene Blood RNA Kit (PreAnalytiX) and concentrated with RNeasy MinElute Cleanup columns (Qiagen).
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
peripheral blood
Data processing
Affymetrix GeneChip® Operating Software (GCOS)
Submission date
Mar 16, 2006
Last update date
Aug 28, 2018
Contact name
Antti Kokko
Organization name
University of Helsinki
Department
Dept of Medical Genetics
Lab
Tumorigenesis group
Street address
POBOX 63 (Haartmaninkatu 8)
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Platform ID
GPL570
Series (2)
GSE4488
Expression data from whole blood
GSE6351
Expression data from peripheral blood from healthy and predisposed individuals
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
VALUE
GCOS-calculated Signal intensity
Data table
ID_REF
ABS_CALL
DETECTION P-VALUE
VALUE
AFFX-BioB-5_at
P
0.00039
295.8
AFFX-BioB-M_at
P
0.000044
1400
AFFX-BioB-3_at
P
0.000297
592.8
AFFX-BioC-5_at
P
0.000052
1484.2
AFFX-BioC-3_at
P
0.000044
2183.4
AFFX-BioDn-5_at
P
0.000095
2005
AFFX-BioDn-3_at
P
0.000044
6808.3
AFFX-CreX-5_at
P
0.000052
18691.4
AFFX-CreX-3_at
P
0.000044
26274.9
AFFX-DapX-5_at
P
0.000095
699.3
AFFX-DapX-M_at
P
0.000662
1590.7
AFFX-DapX-3_at
P
0.00006
1539.6
AFFX-LysX-5_at
P
0.000109
73.1
AFFX-LysX-M_at
P
0.011384
196.2
AFFX-LysX-3_at
P
0.000052
337.3
AFFX-PheX-5_at
P
0.002556
78.9
AFFX-PheX-M_at
P
0.003212
121
AFFX-PheX-3_at
P
0.000754
271.1
AFFX-ThrX-5_at
P
0.000297
169.8
AFFX-ThrX-M_at
P
0.001248
201.5
Total number of rows:
54675
Table truncated, full table size
1412 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM100889.CEL.gz
8.0 Mb
(ftp)
(http)
CEL
GSM100889.EXP.gz
502 b
(ftp)
(http)
EXP
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