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GEO accession:
Sample GSM100903
Query DataSets for GSM100903
Status
Public on May 26, 2006
Title
Acromegaly control C9
Sample type
RNA
Source name
blood
Organism
Homo sapiens
Characteristics
peripheral blood
Extracted molecule
total RNA
Extraction protocol
Total RNA extracted from whole blood with PAXgene Blood RNA Kit (PreAnalytiX) and concentrated with RNeasy MinElute Cleanup columns (Qiagen).
Label
biotin
Label protocol
Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
peripheral blood
Data processing
Affymetrix GeneChip® Operating Software (GCOS)
Submission date
Mar 16, 2006
Last update date
Aug 28, 2018
Contact name
Antti Kokko
Organization name
University of Helsinki
Department
Dept of Medical Genetics
Lab
Tumorigenesis group
Street address
POBOX 63 (Haartmaninkatu 8)
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Platform ID
GPL570
Series (1)
GSE4488
Expression data from whole blood
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
VALUE
GCOS-calculated Signal intensity
Data table
ID_REF
ABS_CALL
DETECTION P-VALUE
VALUE
AFFX-BioB-5_at
P
0.000754
243.6
AFFX-BioB-M_at
P
0.000044
777.4
AFFX-BioB-3_at
P
0.000581
411.1
AFFX-BioC-5_at
P
0.000052
1069.1
AFFX-BioC-3_at
P
0.000052
1730.9
AFFX-BioDn-5_at
P
0.000169
1477.2
AFFX-BioDn-3_at
P
0.000052
5638.5
AFFX-CreX-5_at
P
0.000052
14402.2
AFFX-CreX-3_at
P
0.000044
20312.4
AFFX-DapX-5_at
P
0.000052
530.8
AFFX-DapX-M_at
P
0.000446
1410.7
AFFX-DapX-3_at
P
0.00006
1362.2
AFFX-LysX-5_at
P
0.000972
59.3
AFFX-LysX-M_at
P
0.006871
184.5
AFFX-LysX-3_at
P
0.000052
281.2
AFFX-PheX-5_at
P
0.000857
98.6
AFFX-PheX-M_at
P
0.001102
121
AFFX-PheX-3_at
P
0.001593
167.3
AFFX-ThrX-5_at
P
0.000509
176.1
AFFX-ThrX-M_at
P
0.000754
186.5
Total number of rows:
54675
Table truncated, full table size
1411 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM100903.CEL.gz
8.0 Mb
(ftp)
(http)
CEL
GSM100903.EXP.gz
500 b
(ftp)
(http)
EXP
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