|
| Status |
Public on Sep 29, 2012 |
| Title |
IBC.S04-16287-Stroma |
| Sample type |
RNA |
| |
|
| Source name |
FFPE Breast Biopsy
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Breast
cell type: stromal
disease state: invasive breast cancer
|
| Extracted molecule |
total RNA |
| Extraction protocol |
laser capture microdissection of target cells (Stromal) to estimated >95% total cells using Ambion RNA extraction kit
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol using Fluidics Station 400.
|
| Scan protocol |
GeneChips were scanned using the Affymetrix Scanner
|
| Description |
Gene expression data from IBC
|
| Data processing |
The data were analyzed with dChip software
|
| |
|
| Submission date |
Sep 27, 2012 |
| Last update date |
Sep 29, 2012 |
| Contact name |
Sangjun Lee |
| E-mail(s) |
sangjun_lee@yahoo.com
|
| Phone |
314-454-5119
|
| Fax |
314-454-5505
|
| Organization name |
Washington University at St. Louis
|
| Department |
Pathology
|
| Lab |
Dr. Allred
|
| Street address |
4940 Parkview Place
|
| City |
St Louis |
| State/province |
MO |
| ZIP/Postal code |
63110 |
| Country |
USA |
| |
|
| Platform ID |
GPL1352 |
| Series (2) |
| GSE41198 |
Differentially Expressed Genes Regulating the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer (Group 4 stroma) |
| GSE41228 |
Differentially Expressed Genes Regulating the Progression of Ductal Carcinoma In Situ to Invasive Breast Cancer |
|
